Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Forward (+)

83359299 .. 83364637

Gene Structure 5339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG601600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCTCACCCACCCAAAAGAATTTGATGTGGTTGATCTTGATCCTTATGGTTCTCCCTCTGTCTTCTTGGATTCTGCGATTCAAGCTGTGGCTGATGGAGGCATGCTCATGTGTACCGCAACAGATATGGCAGTACTATGTGGTGGTAATGGGGAGGTTTGCTATTCAAAATATGGTTCCTATCCATTGAAAGGGAAATATTGCCACGAAATGGCTCTGAGAATCCTCTTAGCCTGCATTGAGAGCCATGCAAATCGGTACAAAAGATACATTGTTCCTGTGCTATCTGTTCAGATGGACTTCTATGTTCGTGTTTTTGTCCGAGTCTACTCCTCGGCAAGTGCTATGAAGAACACTCCCCTTAAGCTTTCTTATGTTTATCAGTGCATTGGATGTGATTCTTTTCATCTGCAGCCCCTTGGAAGGACGGTCACTAAGAACACCAGTGTGAGATATCTTCCGGGTTTTGGTCCCATTGTTCCTCAAGAATGCAGTGATTGTGGGAAGAAATTCAATATGGGTGGGCCTATATGGTCTGCTCCTATCCATGATCAAGAATGGGTTACTTCCATACTATCAGATGTGAAATCAATGAAGGATCGTTATCCCGCTTATGATCGCATCTCGGCTGTATTGACAACAATCTCAGAGGAATTGCCAGATGTTCCTCTGTTCTTGAGTCTGCACAGCCTCTGTGCCACTCTCAAGTGCACTTCCCCATCCGCAGTGATTTTCCGTTCTGCTGTGATCAATGCAGGATATCGTATATCTGGAACTCATGTAAACCCATTGGGGTTGAAGTCAGATGCTCCTATGGATATCATTTGGGACATAATGCGCTGCTGGGTGAAAAATCATCCAGTGAAAGCTCAACCTCCAGAACATTCAGGAAGCGTGATACTTGCTAAGGAACCTGTTCTTCAAGCAAATTTTGCTCGAGCTGTTGCGTCTCTTAGCAAGGCACAGACCAAGAAGGTTGCACGGTTCCTTCCAAACCCGGAAAGGCATTGGGGTCCAAAGCTTAGGGCAGGTCGTCAAATCACCAGCAAGCACATTTCTCTCTTGGGTCCAGAGGCTGTCAATGAAATTCTTAACCAGGAAGAAGATGGTGAGGAACACAATGCCAAGCGTCAAAAGACTGAAGATAATCCGCCCTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

387

Amino Acids

42.79

Weight (kDa)

8.5

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM	PF02005	3 - 280	7.3e-88	N2,N2-dimethylguanosine tRNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1019
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	4 cut(s)	117, 609, 723, 1151
AclWI	GGATC	2 cut(s)	35, 606
AcsI	RAATTY	4 cut(s)	20, 509, 928, 1086
AcuI	CTGAAG	1 cut(s)	1161
AfaI	GTAC	3 cut(s)	115, 135, 260
AfiI	CCNNNNNNNGG	5 cut(s)	191, 211, 423, 467, 1157
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	6 cut(s)	83, 168, 190, 514, 799, 923
AjnI	CCWGG	1 cut(s)	1095
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	86, 367, 869, 941, 1021
AluI	AGCT	5 cut(s)	86, 367, 869, 941, 1021
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	1 cut(s)	954
Alw44I	GTGCAC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	35, 606
AlwNI	CAGNNNCTG	2 cut(s)	693, 1076
Ama87I	CYCGRG	1 cut(s)	936
AoxI	GGCC	1 cut(s)	524
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	2 cut(s)	412, 840
ApoI	RAATTY	4 cut(s)	20, 509, 928, 1086
Asp700I	GAANNNNTTC	2 cut(s)	509, 915
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	4 cut(s)	470, 524, 1013, 1067
AsuC2I	CCSGG	2 cut(s)	462, 998
AsuHPI	GGTGA	3 cut(s)	859, 1033, 1121
AvaI	CYCGRG	1 cut(s)	936
AvaII	GGWCC	3 cut(s)	470, 1013, 1067
AxyI	CCTNAGG	1 cut(s)	1156
BaeGI	GKGCMC	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	2 cut(s)	424, 827
BccI	CCATC	4 cut(s)	89, 289, 727, 1100
BciT130I	CCWGG	1 cut(s)	1097
BclI	TGATCA	2 cut(s)	550, 747
BcnI	CCSGG	2 cut(s)	462, 998
BcoDI	GTCTC	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	410
BfrI	CTTAAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	1019
BisI	GCNGC	2 cut(s)	413, 841
BlsI	GCNGC	2 cut(s)	414, 842
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	462, 998, 1097
Bme18I	GGWCC	3 cut(s)	470, 1013, 1067
BmeT110I	CYCGRG	1 cut(s)	936
BmgT120I	GGNCC	4 cut(s)	470, 524, 1013, 1067
BmiI	GGNNCC	6 cut(s)	178, 472, 912, 986, 1014, 1068
BmrFI	CCNGG	3 cut(s)	462, 998, 1097
BmsI	GCATC	2 cut(s)	630, 796
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	2 cut(s)	906, 1022
BpuEI	CTTGAG	3 cut(s)	468, 689, 697
BpuMI	CCSGG	2 cut(s)	462, 998
BsaBI	GATNNNNATC	2 cut(s)	39, 603
BsaJI	CCNNGG	2 cut(s)	333, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 211, 423, 467, 1157
Bse1I	ACTGG	2 cut(s)	444, 860
Bse21I	CCTNAGG	1 cut(s)	1156
Bse8I	GATNNNNATC	2 cut(s)	39, 603
BseBI	CCWGG	1 cut(s)	1097
BseDI	CCNNGG	2 cut(s)	333, 418
BseGI	GGATG	3 cut(s)	398, 719, 856
BseJI	GATNNNNATC	2 cut(s)	39, 603
BseLI	CCNNNNNNNGG	5 cut(s)	191, 211, 423, 467, 1157
BseMII	CTCAG	2 cut(s)	209, 660
BseNI	ACTGG	2 cut(s)	444, 860
BseRI	GAGGAG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	424, 827
BseYI	CCCAGC	1 cut(s)	843
BsgI	GTGCAG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	936
BsiSI	CCGG	2 cut(s)	461, 998
BslFI	GGGAC	2 cut(s)	456, 842
BslI	CCNNNNNNNGG	5 cut(s)	191, 211, 423, 467, 1157
BsmAI	GTCTC	1 cut(s)	954
BsmBI	CGTCTC	1 cut(s)	954
BsmFI	GGGAC	2 cut(s)	456, 842
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
BspACI	CCGC	4 cut(s)	117, 609, 723, 1151
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	2 cut(s)	210, 659
BspLI	GGNNCC	6 cut(s)	178, 472, 912, 986, 1014, 1068
BspMAI	CTGCAG	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	1019
BspPI	GGATC	2 cut(s)	35, 606
BspTI	CTTAAG	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	444, 860
BssECI	CCNNGG	2 cut(s)	333, 418
BssMI	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	1097
Bst4CI	ACNGT	2 cut(s)	430, 984
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	3 cut(s)	104, 235, 1049
BstDEI	CTNAG	8 cut(s)	218, 229, 435, 646, 906, 953, 1022, 1156
BstF5I	GGATG	3 cut(s)	398, 719, 856
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	6 cut(s)	37, 43, 553, 601, 619, 750
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 243, 932
BstNI	CCWGG	1 cut(s)	1097
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	460, 996, 1095
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	424, 827
BstV2I	GAAGAC	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	1156
BsuRI	GGCC	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	398, 719, 856
BtsI	GCAGTG	2 cut(s)	499, 732
BtsIMutI	CAGTG	5 cut(s)	389, 451, 499, 732, 867
BveI	ACCTGC	1 cut(s)	1019
Cac8I	GCNNGC	3 cut(s)	104, 235, 1049
CaiI	CAGNNNCTG	2 cut(s)	693, 1076
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	4 cut(s)	470, 524, 1013, 1067
CseI	GACGC	2 cut(s)	936, 1118
Csp6I	GTAC	3 cut(s)	114, 134, 259
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	5 cut(s)	103, 109, 248, 548, 779
CviQI	GTAC	3 cut(s)	114, 134, 259
DdeI	CTNAG	8 cut(s)	218, 229, 435, 646, 906, 953, 1022, 1156
DpnI	GATC	6 cut(s)	36, 42, 552, 600, 618, 749
DpnII	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
EciI	GGCGGA	1 cut(s)	1140
Eco130I	CCWWGG	1 cut(s)	418
Eco32I	GATATC	3 cut(s)	455, 761, 820
Eco47I	GGWCC	3 cut(s)	470, 1013, 1067
Eco57I	CTGAAG	1 cut(s)	1161
Eco81I	CCTNAGG	1 cut(s)	1156
Eco88I	CYCGRG	1 cut(s)	936
EcoRII	CCWGG	1 cut(s)	1095
EcoRV	GATATC	3 cut(s)	455, 761, 820
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	954
FaeI	CATG	5 cut(s)	106, 112, 251, 551, 782
FaqI	GGGAC	2 cut(s)	456, 842
FatI	CATG	5 cut(s)	102, 108, 247, 547, 778
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	2 cut(s)	550, 747
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	413, 841
FokI	GGATG	3 cut(s)	405, 706, 843
Fsp4HI	GCNGC	2 cut(s)	413, 841
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	2 cut(s)	413, 841
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	2 cut(s)	461, 998
HgaI	GACGC	2 cut(s)	936, 1118
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	5 cut(s)	106, 112, 251, 551, 782
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HindIII	AAGCTT	2 cut(s)	365, 1019
HinfI	GANTC	6 cut(s)	71, 79, 222, 324, 398, 679
HpaII	CCGG	2 cut(s)	461, 998
HphI	GGTGA	3 cut(s)	859, 1033, 1121
Hpy166II	GTNNAC	4 cut(s)	114, 328, 711, 784
Hpy188I	TCNGA	6 cut(s)	219, 294, 323, 580, 649, 805
Hpy188III	TCNNGA	8 cut(s)	38, 485, 554, 676, 771, 878, 888, 1070
Hpy8I	GTNNAC	4 cut(s)	114, 328, 711, 784
HpyAV	CCTTC	4 cut(s)	417, 589, 967, 998
HpyCH4III	ACNGT	2 cut(s)	430, 984
HpyCH4V	TGCA	9 cut(s)	237, 251, 387, 412, 492, 685, 711, 755, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 243, 932
HpyF3I	CTNAG	8 cut(s)	218, 229, 435, 646, 906, 953, 1022, 1156
Hsp92II	CATG	5 cut(s)	106, 112, 251, 551, 782
HspAI	GCGC	1 cut(s)	838
Ksp22I	TGATCA	2 cut(s)	550, 747
Kzo9I	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
LmnI	GCTCC	2 cut(s)	544, 814
Lsp1109I	GCAGC	2 cut(s)	424, 827
LweI	GCATC	2 cut(s)	630, 796
MaeIII	GTNAC	2 cut(s)	430, 562
MalI	GATC	6 cut(s)	36, 42, 552, 600, 618, 749
MboI	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
MboII	GAAGA	8 cut(s)	55, 361, 449, 517, 911, 1112, 1115, 1154
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	5 cut(s)	20, 509, 653, 928, 1086
MlyI	GAGTC	2 cut(s)	333, 688
MroXI	GAANNNNTTC	2 cut(s)	509, 915
MseI	TTAA	2 cut(s)	363, 1092
MslI	CAYNNNNRTG	2 cut(s)	107, 446
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	461, 998
MspR9I	CCNGG	3 cut(s)	462, 998, 1097
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	3 cut(s)	83, 243, 932
NciI	CCSGG	2 cut(s)	462, 998
NdeII	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
NlaIII	CATG	5 cut(s)	106, 112, 251, 551, 782
NlaIV	GGNNCC	6 cut(s)	178, 472, 912, 986, 1014, 1068
NmeAIII	GCCGAG	2 cut(s)	314, 605
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	936
PctI	GAATGC	1 cut(s)	494
PdmI	GAANNNNTTC	2 cut(s)	509, 915
PfeI	GAWTC	4 cut(s)	71, 79, 222, 398
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	414, 842
PleI	GAGTC	2 cut(s)	332, 687
PpsI	GAGTC	2 cut(s)	332, 687
Psp6I	CCWGG	1 cut(s)	1095
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	1095
PspN4I	GGNNCC	6 cut(s)	178, 472, 912, 986, 1014, 1068
PspPI	GGNCC	4 cut(s)	470, 524, 1013, 1067
PspXI	VCTCGAGB	1 cut(s)	936
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	2 cut(s)	693, 1076
RsaI	GTAC	3 cut(s)	115, 135, 260
RsaNI	GTAC	3 cut(s)	114, 134, 259
RseI	CAYNNNNRTG	2 cut(s)	107, 446
SaqAI	TTAA	2 cut(s)	363, 1092
SatI	GCNGC	2 cut(s)	413, 841
Sau3AI	GATC	6 cut(s)	34, 40, 550, 598, 616, 747
Sau96I	GGNCC	4 cut(s)	470, 524, 1013, 1067
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	2 cut(s)	333, 688
ScrFI	CCNGG	3 cut(s)	462, 998, 1097
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	2 cut(s)	630, 796
SfcI	CTRYAG	1 cut(s)	410
Sfr274I	CTCGAG	1 cut(s)	936
SinI	GGWCC	3 cut(s)	470, 1013, 1067
SlaI	CTCGAG	1 cut(s)	936
SmiMI	CAYNNNNRTG	2 cut(s)	107, 446
SmlI	CTYRAG	5 cut(s)	362, 483, 676, 704, 936
SmoI	CTYRAG	5 cut(s)	362, 483, 676, 704, 936
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	5 cut(s)	20, 509, 653, 928, 1086
SsiI	CCGC	4 cut(s)	117, 609, 723, 1151
SspI	AATATT	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	460, 996, 1095
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	430, 984
TaqI	TCGA	1 cut(s)	937
TasI	AATT	5 cut(s)	20, 509, 653, 928, 1086
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	4 cut(s)	71, 79, 222, 398
Tru1I	TTAA	2 cut(s)	363, 1092
Tru9I	TTAA	2 cut(s)	363, 1092
TscAI	CASTG	5 cut(s)	389, 451, 499, 732, 867
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	412, 840
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	362, 395, 608, 1098
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	5 cut(s)	389, 451, 499, 732, 867
Van91I	CCANNNNNTGG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	470, 1013, 1067
XapI	RAATTY	4 cut(s)	20, 509, 928, 1086
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1103
XhoI	CTCGAG	1 cut(s)	936
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	2 cut(s)	509, 915
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.