Rroxscaffold_7G00192270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001945
Physical Location & Seq
Forward (+)
33413684 .. 33413875
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192270.1

Sequence Viewer

Length: 192 bp
ATGCCAATTGGAGTTAATGGCCTTAAGGGAAATGATCACCGCCTCGAGGCGCTTCGATTGACCGGAATTGTCACCGGGGACCGCCGAAATCGAAGAAATCGCCGAATTAGTCAAATGGAACCGTCGGGCATTTGGGCTTTGATCTCACTTTTCCGACCCAAAACACCATCACCCATGGCCACGGCCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.02

Weight (kDa)

11.91

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AciI CCGC 2 cut(s) 40, 82
AcoI YGGCCR 2 cut(s) 177, 183
AfiI CCNNNNNNNGG 1 cut(s) 46
AflII CTTAAG 1 cut(s) 23
AleI CACNNNNGTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 19, 177, 183
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 3 cut(s) 29, 64, 162
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 179
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 170
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 80, 120
BmrFI CCNGG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 75, 174, 180
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 75, 174, 180
BseLI CCNNNNNNNGG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 21, 179, 185
BsiEI CGRYCG 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 63, 75
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 3 cut(s) 21, 179, 185
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 2 cut(s) 34, 141
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 40, 82
BspANI GGCC 3 cut(s) 21, 179, 185
BspLI GGNNCC 2 cut(s) 80, 120
BspTI CTTAAG 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 75, 174, 180
BssMI GATC 2 cut(s) 34, 141
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 23
BstDSI CCRYGG 2 cut(s) 174, 180
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 2 cut(s) 37, 144
BstMBI GATC 2 cut(s) 34, 141
BstMCI CGRYCG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 74
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 21, 179, 185
BtgI CCRYGG 2 cut(s) 174, 180
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 79
CviAII CATG 1 cut(s) 175
CviJI RGCY 4 cut(s) 21, 137, 179, 185
CviKI_1 RGCY 4 cut(s) 21, 137, 179, 185
DpnI GATC 2 cut(s) 36, 143
DpnII GATC 2 cut(s) 34, 141
EaeI YGGCCR 2 cut(s) 177, 183
EagI CGGCCG 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 34
GlaI GCGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 3 cut(s) 21, 179, 185
HapII CCGG 2 cut(s) 63, 75
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HpaII CCGG 2 cut(s) 63, 75
HphI GGTGA 3 cut(s) 29, 64, 162
Hpy188I TCNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 141
LpnPI CCDG 2 cut(s) 76, 88
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 36, 143
MboI GATC 2 cut(s) 34, 141
MboII GAAGA 1 cut(s) 105
MfeI CAATTG 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 3 cut(s) 6, 66, 105
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 40, 53
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 15, 24
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 179
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 2 cut(s) 63, 75
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 6
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 174
NdeII GATC 2 cut(s) 34, 141
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 80, 120
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 80, 120
PspPI GGNCC 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 15, 24
Sau3AI GATC 2 cut(s) 34, 141
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 76
Sfr274I CTCGAG 1 cut(s) 44
SgeI CNNG 7 cut(s) 56, 58, 75, 87, 88, 138, 187
SinI GGWCC 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 23, 44
SmoI CTYRAG 2 cut(s) 23, 44
Sse9I AATT 3 cut(s) 6, 66, 105
SsiI CCGC 2 cut(s) 40, 82
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 45, 55, 91
TasI AATT 3 cut(s) 6, 66, 105
Tru1I TTAA 2 cut(s) 15, 24
Tru9I TTAA 2 cut(s) 15, 24
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.