Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Forward (+)

55663891 .. 55666608

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATTTTGCAACAAATAAGAAGTGATGCAGCCTTATTGACATTGGAAGATGGAGGTGATCTTGATCCTTATGGTTCTCCCTCCGTCTTCTTGGATTCTGTGATTCAAGCTGTTGCTGATGGAGGACTGCTCATGTGTACCGCAATGGATATGCCAATACTATGTGCTGGTAATGGGGAGGTTTGTTATTCAAAATATGGTTCCTATCCATTGAAACGGAAATATTGCCATGAAATGGCTCGAGGTCTTCTTAGCCTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

87

Amino Acids

9.4

Weight (kDa)

4.78

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM	PF02005	20 - 80	8.4e-22	N2,N2-dimethylguanosine tRNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	107, 192, 214
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	79, 239
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	44, 113
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	202
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	79, 239
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BsaBI	GATNNNNATC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	58, 64
BspACI	CCGC	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	2 cut(s)	58, 64
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	61, 67
BstMBI	GATC	2 cut(s)	58, 64
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	79, 239
Cac8I	GCNNGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	2 cut(s)	133, 230
CviJI	RGCY	4 cut(s)	32, 110, 239, 255
CviKI_1	RGCY	4 cut(s)	32, 110, 239, 255
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	60, 66
DpnII	GATC	2 cut(s)	58, 64
Eco88I	CYCGRG	1 cut(s)	240
FaeI	CATG	2 cut(s)	136, 233
FaiI	YATR	6 cut(s)	72, 134, 152, 163, 198, 231
FatI	CATG	2 cut(s)	132, 229
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	136, 233
HinfI	GANTC	2 cut(s)	95, 103
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	10, 29, 259
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	136, 233
Kzo9I	GATC	2 cut(s)	58, 64
LpnPI	CCDG	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	16
MalI	GATC	2 cut(s)	60, 66
MboI	GATC	2 cut(s)	58, 64
MboII	GAAGA	3 cut(s)	59, 79, 239
MnlI	CCTC	5 cut(s)	47, 91, 116, 172, 236
NdeII	GATC	2 cut(s)	58, 64
NlaIII	CATG	2 cut(s)	136, 233
NlaIV	GGNNCC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	95, 103
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	240
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	58, 64
SetI	ASST	4 cut(s)	58, 112, 183, 247
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	240
SgeI	CNNG	8 cut(s)	74, 103, 119, 145, 180, 242, 252, 254
SlaI	CTCGAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	95, 103
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	2 cut(s)	73, 232
Van91I	CCANNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.