Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Forward (+)

66502961 .. 66518319

Gene Structure 15359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG495000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTGGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTGGGTGATTCAATCAACAGAAATCAATGGGAATCCATGTTGTGCATGTCAATGGGAGCAATAAAAGATTCAAACAAGGTTGATCTTGATCCTTATGGTTCTCCCTCCGTCTTCTTGGATTCTGCGATTCAAGCTGTTGCTGATGGAGGCATGCTCATGTGTACCGCAACGGATATGCCAGTACTATGTGCTGGTAATGGGGAGGTGATACAATTTCTCGAATCCCCAGAATATAACATGTTTACTTGTATCGTCTTTGATACTGCACCCACGGGCCATACCTTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATATTGAAGGCATCAGAAAGGCTTCTCAGAGGCCCAAACTTTCTTGGAGGCCCAAAACTGATAAAGGGCACCCAGCTGCATTCCTCACGCGTGCCTTGTTTCAATTTCCACTGCCCCAGAGGCCAGAACCACGGTGAACACGAGCTTGGCATATCATTTTTGCCAAGTCGAATTAGAGATGGATTTGGAGACCGAAATCAATTCGGAGACGGTATTGAGGACGGAGTCGCAACCATATTCTTGCCCAAAAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

207

Amino Acids

22.69

Weight (kDa)

5.94

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 39	4e-13	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
TRM	PF02005	13 - 77	7.6e-15	N2,N2-dimethylguanosine tRNA methyltransferase
ArsA_ATPase	PF02374	81 - 130	5.3e-11	Anion-transporting ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccII	CGCG	1 cut(s)	456
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	199, 219
AflIII	ACRYGT	2 cut(s)	273, 454
AgsI	TTSAA	5 cut(s)	48, 108, 167, 373, 469
AhlI	ACTAGT	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	4 cut(s)	10, 170, 442, 511
AluI	AGCT	4 cut(s)	10, 170, 442, 511
Alw26I	GTCTC	3 cut(s)	19, 549, 567
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	4 cut(s)	310, 397, 415, 487
ApeKI	GCWGC	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	310, 398, 416
AsuHPI	GGTGA	3 cut(s)	53, 253, 512
BaeGI	GKGCMC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	2 cut(s)	173, 539
BcoDI	GTCTC	3 cut(s)	19, 549, 567
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	486
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
BmcAI	AGTACT	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	310, 398, 416
BmiI	GGNNCC	1 cut(s)	436
BmsI	GCATC	3 cut(s)	340, 362, 386
BpiI	GAAGAC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	306, 496
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	306, 496
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	4 cut(s)	312, 399, 417, 489
BshNI	GGYRCC	1 cut(s)	434
BsmAI	GTCTC	3 cut(s)	19, 549, 567
BsmBI	CGTCTC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	312, 399, 417, 489
Bso31I	GGTCTC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	118, 124
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	4 cut(s)	312, 399, 417, 489
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	306, 496
BssMI	GATC	2 cut(s)	118, 124
BssSI	CACGAG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	500, 578
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	188, 458
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	2 cut(s)	306, 496
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	121, 127
BstMAI	GTCTC	3 cut(s)	19, 549, 567
BstMBI	GATC	2 cut(s)	118, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 486
BstNSI	RCATGY	3 cut(s)	85, 190, 277
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	139
BsuRI	GGCC	4 cut(s)	312, 399, 417, 489
BtgI	CCRYGG	2 cut(s)	306, 496
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	188, 458
Cfr13I	GGNCC	3 cut(s)	310, 398, 416
Csp6I	GTAC	2 cut(s)	198, 218
CviAII	CATG	5 cut(s)	73, 82, 187, 193, 274
CviJI	RGCY	9 cut(s)	10, 170, 312, 388, 399, 417, 442, 489, 511
CviKI_1	RGCY	9 cut(s)	10, 170, 312, 388, 399, 417, 442, 489, 511
CviQI	GTAC	2 cut(s)	198, 218
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	2 cut(s)	120, 126
DpnII	GATC	2 cut(s)	118, 124
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	5 cut(s)	76, 85, 190, 196, 277
FatI	CATG	5 cut(s)	72, 81, 186, 192, 273
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	312, 399, 417, 489
Hin1II	CATG	5 cut(s)	76, 85, 190, 196, 277
HinfI	GANTC	7 cut(s)	44, 68, 104, 155, 163, 257, 591
HphI	GGTGA	3 cut(s)	53, 253, 512
Hpy166II	GTNNAC	3 cut(s)	198, 279, 503
Hpy188I	TCNGA	3 cut(s)	382, 395, 572
Hpy188III	TCNNGA	2 cut(s)	122, 254
Hpy8I	GTNNAC	3 cut(s)	198, 279, 503
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	500, 578
HpyCH4V	TGCA	4 cut(s)	81, 302, 353, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 486
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	5 cut(s)	76, 85, 190, 196, 277
Kzo9I	GATC	2 cut(s)	118, 124
LmnI	GCTCC	2 cut(s)	7, 92
LpnPI	CCDG	7 cut(s)	213, 228, 276, 351, 452, 496, 503
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	3 cut(s)	340, 362, 386
MaeI	CTAG	1 cut(s)	29
MalI	GATC	2 cut(s)	120, 126
MboI	GATC	2 cut(s)	118, 124
MboII	GAAGA	2 cut(s)	34, 139
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	5 cut(s)	248, 357, 469, 537, 566
MluI	ACGCGT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	600
MnlI	CCTC	9 cut(s)	11, 151, 176, 232, 389, 407, 460, 479, 577
Mph1103I	ATGCAT	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	622
MslI	CAYNNNNRTG	2 cut(s)	86, 191
MspA1I	CMGCKG	1 cut(s)	442
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	167, 486
NdeII	GATC	2 cut(s)	118, 124
NlaIII	CATG	5 cut(s)	76, 85, 190, 196, 277
NlaIV	GGNNCC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	3 cut(s)	85, 190, 277
PaeI	GCATGC	1 cut(s)	190
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	6 cut(s)	44, 68, 104, 155, 163, 257
PflFI	GACNNNGTC	1 cut(s)	590
PkrI	GCNGC	1 cut(s)	444
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	3 cut(s)	310, 398, 416
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	199, 219
RsaNI	GTAC	2 cut(s)	198, 218
RseI	CAYNNNNRTG	2 cut(s)	86, 191
SaqAI	TTAA	1 cut(s)	622
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	2 cut(s)	118, 124
Sau96I	GGNCC	3 cut(s)	310, 398, 416
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	12, 117, 172, 243, 320, 444, 513
SfaNI	GCATC	3 cut(s)	340, 362, 386
SmiMI	CAYNNNNRTG	2 cut(s)	86, 191
SpeI	ACTAGT	1 cut(s)	28
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	5 cut(s)	248, 357, 469, 537, 566
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	500, 578
TaqI	TCGA	2 cut(s)	255, 535
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	5 cut(s)	248, 357, 469, 537, 566
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	6 cut(s)	44, 68, 104, 155, 163, 257
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TscAI	CASTG	1 cut(s)	482
TseI	GCWGC	1 cut(s)	442
TspGWI	ACGGA	3 cut(s)	133, 221, 603
TspRI	CASTG	1 cut(s)	482
Tth111I	GACNNNGTC	1 cut(s)	590
XceI	RCATGY	3 cut(s)	85, 190, 277
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.