Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

10470901 .. 10474050

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTGACGTCGCTCGCTTTCCTCGACGGGTGACGGCTAAAATTGTAAATCTGATAGTAATTGCTTTGAAATCGTTGTTGAACTGTGCTATGCGCCTCTGGGTCTATATAGTTTCTGATATGATCCTCAGTGTAGTTGAAGATGAAGGTTTTAATTGTCAGGGCAATGGGAAATTAGGTAAAGATTACATGAAGTGGAGATGGCAACCCCAAGATTGTGAAATTCCAAGACTTAAAGTTGAGTACTTTTGGTGTGGACTGTGTGTTGATCTTGATCCTTATGGTTCTCCTTCCGTCTTCTTGGATTCTGCGATTCAAGCTGTTGCTGATGGAGGCATGCTCATGTGTACCGCAACGGATATGCCAGTACTATGTGCTGGTAATGGGGAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCATCTTTGATACTACACCCATGGGCCATACCTTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCGTCAATTTGCAAGATATTGAAGTCAGACAAATTAGAGAAATTACGGGAGAGGATGATTAAAGTGCGTGAGCTTTTTCATGATACCGATTCCACAGAATTTGCCATAGTAACAATACCCACAGTCTGGTACTTTCATATGGTATTGCTGGTAGAAGAGAAAAGGGGAGCAGGGGTACAAGCTCGAGAGCTCAAGAAAGATGATGAAGTGTGGCTGGTCGGGAGATCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

244

Amino Acids

27.85

Weight (kDa)

5.34

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	48 - 74	4.3e-08	PMR5 N terminal Domain
TRM	PF02005	88 - 127	2.7e-13	N2,N2-dimethylguanosine tRNA methyltransferase
ArsA_ATPase	PF02374	131 - 188	1.3e-08	Anion-transporting ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	627
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	2 cut(s)	118, 269
AcsI	RAATTY	2 cut(s)	222, 599
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	5 cut(s)	245, 349, 369, 632, 678
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	5 cut(s)	70, 82, 140, 317, 523
AluBI	AGCT	4 cut(s)	320, 574, 683, 691
AluI	AGCT	4 cut(s)	320, 574, 683, 691
Alw21I	GWGCWC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	118, 269
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	1 cut(s)	460
ApoI	RAATTY	2 cut(s)	222, 599
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	3 cut(s)	43, 402, 403
AvaI	CYCGRG	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	693
BccI	CCATC	2 cut(s)	195, 323
BceAI	ACGGC	1 cut(s)	51
BmcAI	AGTACT	2 cut(s)	245, 369
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	460
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	505, 561
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	627
BsnI	GGCC	1 cut(s)	462
BsoBI	CYCGRG	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	123, 268, 274, 725
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	580
BspPI	GGATC	2 cut(s)	118, 269
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	4 cut(s)	123, 268, 274, 725
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	86, 261, 625
Bst6I	CTCTTC	1 cut(s)	651
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	16, 338
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	505, 561
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	126, 271, 277, 728
BstMBI	GATC	4 cut(s)	123, 268, 274, 725
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	340, 427
BstV2I	GAAGAC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	505, 561
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	16, 338
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	244, 348, 368, 631, 677
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	6 cut(s)	190, 337, 343, 424, 457, 581
CviJI	RGCY	7 cut(s)	38, 320, 462, 574, 683, 691, 715
CviKI_1	RGCY	7 cut(s)	38, 320, 462, 574, 683, 691, 715
CviQI	GTAC	5 cut(s)	244, 348, 368, 631, 677
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	4 cut(s)	125, 270, 276, 727
DpnII	GATC	4 cut(s)	123, 268, 274, 725
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	693
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	684
EcoICRI	GAGCTC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	6 cut(s)	193, 340, 346, 427, 460, 584
FatI	CATG	6 cut(s)	189, 336, 342, 423, 456, 580
FauNDI	CATATG	1 cut(s)	639
FokI	GGATG	2 cut(s)	512, 568
FriOI	GRGCYC	1 cut(s)	693
GlaI	GCGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	462
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	6 cut(s)	193, 340, 346, 427, 460, 584
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	305, 313, 407, 590
HphI	GGTGA	3 cut(s)	43, 402, 403
Hpy166II	GTNNAC	4 cut(s)	7, 257, 348, 429
Hpy188I	TCNGA	3 cut(s)	54, 118, 529
Hpy188III	TCNNGA	6 cut(s)	272, 404, 581, 686, 694, 721
Hpy8I	GTNNAC	4 cut(s)	7, 257, 348, 429
Hpy99I	CGWCG	2 cut(s)	14, 30
HpyAV	CCTTC	2 cut(s)	140, 300
HpyCH4III	ACNGT	3 cut(s)	86, 261, 625
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	6 cut(s)	193, 340, 346, 427, 460, 584
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	123, 268, 274, 725
LmnI	GCTCC	1 cut(s)	668
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	31, 610
MalI	GATC	4 cut(s)	125, 270, 276, 727
MboI	GATC	4 cut(s)	123, 268, 274, 725
MboII	GAAGA	3 cut(s)	152, 289, 668
MhlI	GDGCHC	1 cut(s)	693
MnlI	CCTC	6 cut(s)	33, 107, 137, 326, 382, 546
MseI	TTAA	3 cut(s)	153, 234, 561
MslI	CAYNNNNRTG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	4 cut(s)	123, 268, 274, 725
NlaIII	CATG	6 cut(s)	193, 340, 346, 427, 460, 584
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	340, 427
PaeI	GCATGC	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	684
PagI	TCATGA	1 cut(s)	580
PciI	ACATGT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	4 cut(s)	305, 313, 407, 590
PflMI	CCANNNNNTGG	1 cut(s)	627
PscI	ACATGT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	460
RsaI	GTAC	5 cut(s)	245, 349, 369, 632, 678
RsaNI	GTAC	5 cut(s)	244, 348, 368, 631, 677
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	153, 234, 561
Sau3AI	GATC	4 cut(s)	123, 268, 274, 725
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	2 cut(s)	245, 369
SduI	GDGCHC	1 cut(s)	693
SetI	ASST	9 cut(s)	12, 151, 181, 322, 393, 470, 576, 685, 693
SfaNI	GCATC	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	684
SlaI	CTCGAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	684, 692
SmoI	CTYRAG	2 cut(s)	684, 692
SphI	GCATGC	1 cut(s)	340
SsiI	CCGC	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	86, 261, 625
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	25, 405, 685
TatI	WGTACW	2 cut(s)	243, 367
TfiI	GAWTC	4 cut(s)	305, 313, 407, 590
Tru1I	TTAA	3 cut(s)	153, 234, 561
Tru9I	TTAA	3 cut(s)	153, 234, 561
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	159, 206, 569, 626, 720
TspGWI	ACGGA	2 cut(s)	283, 371
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	222, 599
XceI	RCATGY	2 cut(s)	340, 427
XhoI	CTCGAG	1 cut(s)	684
ZraI	GACGTC	1 cut(s)	10
ZrmI	AGTACT	2 cut(s)	245, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.