Rh2BG572900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001945
Physical Location & Seq
Reverse (-)
78916971 .. 78917240
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG572900.1

Sequence Viewer

Length: 270 bp
ATGGGTTCTGTGAGAGGGAGACCGAGCAGAGGAGATAGACCGAGCAGGGAGACCGACCGGAGACCGAGCAGAGGGAGATCGACCGGAGACCGAGCAGAGGGAGATCGACCAGAGGAGAGCGGAGATCGAGTGGAGACCGAGCAGAGGAGATCGACCAGAGGAGATCGAGCGGAGACCGAGCAGAGGGAGATCGACCGGAGACCGAGCAGAGGAGATCGACCGGATGGAGATGGGAGATCGACCGATGGAGATGGGAGATCGACCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.95

Weight (kDa)

10.66

Isoelectric Point (pI)

83.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 120, 170
AciI CCGC 2 cut(s) 120, 170
AfiI CCNNNNNNNGG 6 cut(s) 29, 71, 97, 144, 183, 209
Alw26I GTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
BccI CCATC 4 cut(s) 218, 224, 239, 245
BcoDI GTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
BsaI GGTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
BsaWI WCCGGW 5 cut(s) 57, 83, 195, 220, 263
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 71, 97, 144, 183, 209
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 6 cut(s) 29, 71, 97, 144, 183, 209
BseRI GAGGAG 5 cut(s) 45, 128, 160, 174, 225
Bsh1285I CGRYCG 6 cut(s) 58, 84, 196, 221, 243, 264
BsiEI CGRYCG 6 cut(s) 58, 84, 196, 221, 243, 264
BsiSI CCGG 5 cut(s) 58, 84, 196, 221, 264
BslI CCNNNNNNNGG 6 cut(s) 29, 71, 97, 144, 183, 209
BsmAI GTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
Bso31I GGTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
Bsp143I GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
BspACI CCGC 2 cut(s) 120, 170
BspTNI GGTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
BsrBI CCGCTC 2 cut(s) 120, 170
BssMI GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 9 cut(s) 80, 106, 127, 152, 166, 192, 217, 239, 260
BstMAI GTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
BstMBI GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
BstMCI CGRYCG 6 cut(s) 58, 84, 196, 221, 243, 264
BtsCI GGATG 1 cut(s) 229
DpnI GATC 9 cut(s) 79, 105, 126, 151, 165, 191, 216, 238, 259
DpnII GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
Eco31I GGTCTC 7 cut(s) 13, 44, 55, 81, 128, 167, 193
FokI GGATG 1 cut(s) 236
HapII CCGG 5 cut(s) 58, 84, 196, 221, 264
HpaII CCGG 5 cut(s) 58, 84, 196, 221, 264
Kzo9I GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
LpnPI CCDG 7 cut(s) 31, 71, 97, 123, 169, 209, 234
MalI GATC 9 cut(s) 79, 105, 126, 151, 165, 191, 216, 238, 259
MbiI CCGCTC 2 cut(s) 120, 170
MboI GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
MnlI CCTC 9 cut(s) 8, 23, 65, 91, 106, 138, 152, 177, 203
MspI CCGG 5 cut(s) 58, 84, 196, 221, 264
NdeII GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
Sau3AI GATC 9 cut(s) 77, 103, 124, 149, 163, 189, 214, 236, 257
SsiI CCGC 2 cut(s) 120, 170
TaqI TCGA 9 cut(s) 80, 106, 127, 152, 166, 192, 217, 239, 260
TaqII GACCGA 9 cut(s) 37, 55, 68, 79, 105, 152, 191, 217, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.