Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026009.1

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4651

Gene Structure 4651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026009.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 943 bp

atggggctcgctacccaacaccctctacttagcgcagctcccctcaacaaacaatacactgaccaaacggaggtctatcttagccggggagtatgggactccctggggggcccagcaggggcccacccgaaaggatataaagcgtttgctcacaggctaccgcctgagccccgactcactcctagatcaccgctgaagcgccgcgctaagatagcatcagaagctccagaagctgggaaccgaagcatatcagtcccccatcgaaaacatagaagagagctgaaggagaagctagcaagtagcacgaatgctcgtctcaccacggccatctatttaccgctcgccatctatgggctagcctcatcgtcttctcaccctcatgttgttgaggaggaaaattttgctggagctgttgcgtctcttagcaaggtacagaataagaaggttgcacgcttccttccagacccggaaatgcatttaggtccaaagcttagggcaggtcgtcaaatcaccagcaagcacatttctctcttaggtccagaggttgtcaatgaaattcttaaccaggaagaagatggcagggaacacaatgccaagcgtcaaaggactgaagataatcccctccctcaggttgatgaaatgaaggtccttagagagcagcaacctcgtcacaaggctcttttcttgccttccgagaaaggacttcttgccttacggactaagcagatcaatcactgggaagtttggagaaagcacaaggttttgctaaagcgtgactttagcttcgctgggttgcgagggcgttacccttgcttcgctggtagtatcggtggcagtagtactaacagtcggctcttggagagactaggactggaagcacggttgcagggttggtttggtggcgctgacaatcggctctcgaggagactgggactggaacgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

314

Amino Acids

35.16

Weight (kDa)

10.33

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	340
AccII	CGCG	1 cut(s)	204
AciI	CCGC	4 cut(s)	161, 191, 202, 338
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	397, 555
AcuI	CTGAAG	3 cut(s)	215, 302, 630
AfaI	GTAC	2 cut(s)	432, 841
AfiI	CCNNNNNNNGG	5 cut(s)	70, 118, 233, 351, 628
AjnI	CCWGG	2 cut(s)	102, 564
AluBI	AGCT	8 cut(s)	38, 224, 233, 280, 292, 410, 490, 783
AluI	AGCT	8 cut(s)	38, 224, 233, 280, 292, 410, 490, 783
Alw26I	GTCTC	4 cut(s)	320, 423, 856, 919
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	919
AoxI	GGCC	3 cut(s)	109, 120, 324
ApaI	GGGCCC	2 cut(s)	113, 124
ApeKI	GCWGC	2 cut(s)	35, 658
ApoI	RAATTY	2 cut(s)	397, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspLEI	GCGC	4 cut(s)	35, 201, 206, 905
AspS9I	GGNCC	7 cut(s)	109, 110, 120, 121, 482, 536, 646
AsuC2I	CCSGG	2 cut(s)	86, 467
AsuHPI	GGTGA	4 cut(s)	180, 310, 365, 502
AsuNHI	GCTAGC	2 cut(s)	292, 355
AvaI	CYCGRG	1 cut(s)	919
AvaII	GGWCC	3 cut(s)	482, 536, 646
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	2 cut(s)	113, 124
BanII	GRGCYC	4 cut(s)	9, 113, 124, 171
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	47, 670
BccI	CCATC	4 cut(s)	267, 335, 353, 569
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	2 cut(s)	104, 566
BcnI	CCSGG	2 cut(s)	86, 467
BcoDI	GTCTC	4 cut(s)	320, 423, 856, 919
BfaI	CTAG	4 cut(s)	183, 293, 356, 866
BfoI	RGCGCY	2 cut(s)	202, 906
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	36, 202, 659
BlsI	GCNGC	3 cut(s)	37, 203, 660
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	4 cut(s)	86, 104, 467, 566
Bme18I	GGWCC	3 cut(s)	482, 536, 646
BmeT110I	CYCGRG	1 cut(s)	919
BmgT120I	GGNCC	7 cut(s)	109, 110, 120, 121, 482, 536, 646
BmiI	GGNNCC	5 cut(s)	110, 111, 121, 122, 239
BmrFI	CCNGG	4 cut(s)	86, 104, 467, 566
BmrI	ACTGGG	2 cut(s)	745, 938
BmsI	GCATC	1 cut(s)	224
BmtI	GCTAGC	2 cut(s)	296, 359
BmuI	ACTGGG	2 cut(s)	745, 938
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	210, 426
Bpu10I	CCTNAGC	2 cut(s)	165, 491
BpuMI	CCSGG	2 cut(s)	86, 467
BsaJI	CCNNGG	4 cut(s)	85, 102, 103, 321
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 118, 233, 351, 628
Bse1I	ACTGG	4 cut(s)	740, 876, 933, 939
Bse21I	CCTNAGG	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	104, 566
BseDI	CCNNGG	4 cut(s)	85, 102, 103, 321
BseLI	CCNNNNNNNGG	5 cut(s)	70, 118, 233, 351, 628
BseMII	CTCAG	2 cut(s)	156, 641
BseNI	ACTGG	4 cut(s)	740, 876, 933, 939
BseRI	GAGGAG	2 cut(s)	404, 937
BseSI	GKGCMC	2 cut(s)	113, 124
BseXI	GCAGC	2 cut(s)	47, 670
BseYI	CCCAGC	3 cut(s)	112, 233, 788
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	111, 122, 326
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	85, 467
BslFI	GGGAC	2 cut(s)	110, 239
BslI	CCNNNNNNNGG	5 cut(s)	70, 118, 233, 351, 628
BsmAI	GTCTC	4 cut(s)	320, 423, 856, 919
BsmBI	CGTCTC	2 cut(s)	320, 423
BsmFI	GGGAC	2 cut(s)	110, 239
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	111, 122, 326
BsoBI	CYCGRG	1 cut(s)	919
Bsp120I	GGGCCC	2 cut(s)	109, 120
Bsp1286I	GDGCHC	4 cut(s)	9, 113, 124, 171
Bsp143I	GATC	2 cut(s)	185, 726
BspACI	CCGC	4 cut(s)	161, 191, 202, 338
BspANI	GGCC	3 cut(s)	111, 122, 326
BspCNI	CTCAG	2 cut(s)	157, 640
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	5 cut(s)	110, 111, 121, 122, 239
BspMI	ACCTGC	1 cut(s)	488
BspOI	GCTAGC	2 cut(s)	296, 359
BsrBI	CCGCTC	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	740, 876, 933, 939
BssECI	CCNNGG	4 cut(s)	85, 102, 103, 321
BssMI	GATC	2 cut(s)	185, 726
Bst2UI	CCWGG	2 cut(s)	104, 566
Bst4CI	ACNGT	2 cut(s)	848, 882
Bst6I	CTCTTC	1 cut(s)	268
BstC8I	GCNNGC	6 cut(s)	9, 294, 342, 357, 451, 518
BstDSI	CCRYGG	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	2 cut(s)	202, 906
BstHHI	GCGC	4 cut(s)	35, 201, 206, 905
BstKTI	GATC	2 cut(s)	188, 729
BstMAI	GTCTC	4 cut(s)	320, 423, 856, 919
BstMBI	GATC	2 cut(s)	185, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 221, 230
BstNI	CCWGG	2 cut(s)	104, 566
BstSCI	CCNGG	4 cut(s)	84, 102, 465, 564
BstSLI	GKGCMC	2 cut(s)	113, 124
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	47, 670
BstV2I	GAAGAC	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	111, 122, 326
BtgI	CCRYGG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	57, 733
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	6 cut(s)	9, 294, 342, 357, 451, 518
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	4 cut(s)	35, 201, 206, 905
Cfr13I	GGNCC	7 cut(s)	109, 110, 120, 121, 482, 536, 646
CseI	GACGC	2 cut(s)	405, 587
Csp6I	GTAC	2 cut(s)	431, 840
CviAII	CATG	1 cut(s)	380
CviQI	GTAC	2 cut(s)	431, 840
DpnI	GATC	2 cut(s)	187, 728
DpnII	GATC	2 cut(s)	185, 726
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco24I	GRGCYC	4 cut(s)	9, 113, 124, 171
Eco47I	GGWCC	3 cut(s)	482, 536, 646
Eco57I	CTGAAG	3 cut(s)	215, 302, 630
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO109I	RGGNCCY	3 cut(s)	109, 120, 646
EcoRII	CCWGG	2 cut(s)	102, 564
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	4 cut(s)	9, 113, 124, 171
Esp3I	CGTCTC	2 cut(s)	320, 423
FaeI	CATG	1 cut(s)	383
FaiI	YATR	6 cut(s)	94, 138, 248, 270, 351, 381
FalI	AAGNNNNNCTT	4 cut(s)	690, 722, 761, 793
FaqI	GGGAC	2 cut(s)	110, 239
FatI	CATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	36, 202, 659
FriOI	GRGCYC	4 cut(s)	9, 113, 124, 171
Fsp4HI	GCNGC	3 cut(s)	36, 202, 659
FspBI	CTAG	4 cut(s)	183, 293, 356, 866
GlaI	GCGC	4 cut(s)	34, 200, 205, 904
GluI	GCNGC	3 cut(s)	36, 202, 659
GsaI	CCCAGC	3 cut(s)	116, 237, 792
GsuI	CTGGAG	2 cut(s)	210, 426
HaeII	RGCGCY	2 cut(s)	202, 906
HaeIII	GGCC	3 cut(s)	111, 122, 326
HapII	CCGG	2 cut(s)	85, 467
HgaI	GACGC	2 cut(s)	405, 587
HhaI	GCGC	4 cut(s)	35, 201, 206, 905
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	4 cut(s)	33, 199, 204, 903
HinP1I	GCGC	4 cut(s)	33, 199, 204, 903
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	98, 174
HpaII	CCGG	2 cut(s)	85, 467
HphI	GGTGA	4 cut(s)	180, 310, 365, 502
Hpy188I	TCNGA	2 cut(s)	220, 694
Hpy188III	TCNNGA	4 cut(s)	227, 461, 539, 919
HpyAV	CCTTC	5 cut(s)	277, 436, 467, 637, 699
HpyCH4III	ACNGT	2 cut(s)	848, 882
HpyCH4IV	ACGT	1 cut(s)	940
HpyCH4V	TGCA	3 cut(s)	449, 475, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 221, 230
HpySE526I	ACGT	1 cut(s)	940
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	4 cut(s)	33, 199, 204, 903
Kzo9I	GATC	2 cut(s)	185, 726
LmnI	GCTCC	3 cut(s)	43, 229, 407
Lsp1109I	GCAGC	2 cut(s)	47, 670
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	4 cut(s)	183, 293, 356, 866
MaeII	ACGT	1 cut(s)	940
MaeIII	GTNAC	3 cut(s)	668, 773, 803
MalI	GATC	2 cut(s)	187, 728
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	2 cut(s)	185, 726
MboII	GAAGA	5 cut(s)	285, 360, 581, 584, 623
MhlI	GDGCHC	4 cut(s)	9, 113, 124, 171
MluCI	AATT	2 cut(s)	397, 555
MlyI	GAGTC	2 cut(s)	92, 168
Mph1103I	ATGCAT	1 cut(s)	477
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	2 cut(s)	85, 467
MspR9I	CCNGG	4 cut(s)	86, 104, 467, 566
MteI	GCGCNGCGC	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	104, 566
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	212, 221, 230
NciI	CCSGG	2 cut(s)	86, 467
NdeII	GATC	2 cut(s)	185, 726
NheI	GCTAGC	2 cut(s)	292, 355
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	5 cut(s)	110, 111, 121, 122, 239
NmuCI	GTSAC	2 cut(s)	668, 773
NsiI	ATGCAT	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	919
PasI	CCCWGGG	1 cut(s)	103
PctI	GAATGC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	37, 203, 660
PleI	GAGTC	2 cut(s)	92, 168
PpsI	GAGTC	2 cut(s)	92, 168
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	102, 564
PspFI	CCCAGC	3 cut(s)	112, 233, 788
PspGI	CCWGG	2 cut(s)	102, 564
PspN4I	GGNNCC	5 cut(s)	110, 111, 121, 122, 239
PspOMI	GGGCCC	2 cut(s)	109, 120
PspPI	GGNCC	7 cut(s)	109, 110, 120, 121, 482, 536, 646
PspPPI	RGGWCCY	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	432, 841
RsaNI	GTAC	2 cut(s)	431, 840
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	36, 202, 659
Sau3AI	GATC	2 cut(s)	185, 726
Sau96I	GGNCC	7 cut(s)	109, 110, 120, 121, 482, 536, 646
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	92, 168
ScrFI	CCNGG	4 cut(s)	86, 104, 467, 566
SduI	GDGCHC	4 cut(s)	9, 113, 124, 171
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	919
SinI	GGWCC	3 cut(s)	482, 536, 646
SlaI	CTCGAG	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
Sse9I	AATT	2 cut(s)	397, 555
SsiI	CCGC	4 cut(s)	161, 191, 202, 338
SspMI	CTAG	4 cut(s)	183, 293, 356, 866
StyD4I	CCNGG	4 cut(s)	84, 102, 465, 564
TaaI	ACNGT	2 cut(s)	848, 882
TaiI	ACGT	1 cut(s)	943
TaqI	TCGA	2 cut(s)	262, 920
TasI	AATT	2 cut(s)	397, 555
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	64, 740
TseFI	GTSAC	2 cut(s)	668, 773
TseI	GCWGC	2 cut(s)	35, 658
Tsp45I	GTSAC	2 cut(s)	668, 773
TspDTI	ATGAA	3 cut(s)	567, 651, 656
TspGWI	ACGGA	2 cut(s)	83, 730
TspRI	CASTG	2 cut(s)	64, 740
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	3 cut(s)	482, 536, 646
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	2 cut(s)	397, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	919
XspI	CTAG	4 cut(s)	183, 293, 356, 866
ZrmI	AGTACT	1 cut(s)	841
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.