Rroxscaffold_1G00025420

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001945
Physical Location & Seq
Reverse (-)
31901350 .. 31903129
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025420.1

Sequence Viewer

Length: 513 bp
ATGAAGTCGGCAAATTTGTCGGAATCGGCGGACTTGGCCATGAATCAACTTCTGCTTAACCGATTGGGCATGTTCAATGAACATAGAATGATTGGATTGCCATTCCTTCTTACCCTCCCGAGTTCAGTTAGAGTTGCTAGAAACACGCTTGCTCCCGGGGCTGTTGCTATCAACCGGATTCTCAAGGATGGTGCTGGTCGTGTTGGAAAAAAAATACTTTTTGCCCGACAAGGAAAGAAGTTTGACTATGATCTAAAACAAGTTACATTTTTGTGGGTAATCTTCTTATGGAGTTGGGTGCTGGGGTTGAGTTGGCAACTGCAGCTTGTGCCGCACCTTTTTCTTCCTTTGGCTTGTGCAGCTATTGTGGCAAAGAATGTTGCTGCTGTAACGTCAACATCAACTCGTACACCAATTTATAAAGCATTTGCTAAAGGAGGAAATAATGGGGATGTGACAGCTAAGGGAGAATGTGTGGGCAAGTTTATTCTTCTGCTCAACATGCTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

170

Amino Acids

18.64

Weight (kDa)

10.13

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 42 - 168 2.3e-25 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AciI CCGC 2 cut(s) 29, 332
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 3 cut(s) 325, 362, 461
AluI AGCT 3 cut(s) 325, 362, 461
Ama87I CYCGRG 2 cut(s) 118, 155
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 3 cut(s) 322, 359, 383
ApoI RAATTY 1 cut(s) 13
AsuC2I CCSGG 2 cut(s) 156, 157
AvaI CYCGRG 2 cut(s) 118, 155
BalI TGGCCA 1 cut(s) 38
BbvI GCAGC 3 cut(s) 334, 370, 371
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 1 cut(s) 34
BcnI CCSGG 2 cut(s) 156, 157
BfaI CTAG 2 cut(s) 138, 506
BfmI CTRYAG 1 cut(s) 320
BisI GCNGC 4 cut(s) 323, 332, 360, 384
BlsI GCNGC 4 cut(s) 324, 333, 361, 385
Bme1390I CCNGG 2 cut(s) 156, 157
BmeT110I CYCGRG 2 cut(s) 118, 155
BmrFI CCNGG 2 cut(s) 156, 157
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 156, 157
BsaJI CCNNGG 2 cut(s) 155, 156
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 459, 489
BseDI CCNNGG 2 cut(s) 155, 156
BseGI GGATG 2 cut(s) 193, 457
BseXI GCAGC 3 cut(s) 334, 370, 371
BseYI CCCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 2 cut(s) 118, 155
BsiSI CCGG 2 cut(s) 156, 175
BsnI GGCC 1 cut(s) 38
BsoBI CYCGRG 2 cut(s) 118, 155
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 2 cut(s) 29, 332
BspANI GGCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 155, 156
BssMI GATC 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 193, 457
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 8 cut(s) 35, 158, 322, 328, 331, 359, 368, 502
BstNSI RCATGY 2 cut(s) 73, 505
BstSCI CCNGG 2 cut(s) 154, 155
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 334, 370, 371
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 193, 457
Cac8I GCNNGC 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 155
Csp6I GTAC 1 cut(s) 408
CviAII CATG 3 cut(s) 40, 70, 502
CviJI RGCY 6 cut(s) 38, 161, 325, 353, 362, 461
CviKI_1 RGCY 6 cut(s) 38, 161, 325, 353, 362, 461
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 36
EciI GGCGGA 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 118, 155
FaeI CATG 3 cut(s) 43, 73, 505
FaiI YATR 7 cut(s) 41, 71, 84, 249, 289, 420, 503
FatI CATG 3 cut(s) 39, 69, 501
Fnu4HI GCNGC 4 cut(s) 323, 332, 360, 384
FokI GGATG 2 cut(s) 200, 464
Fsp4HI GCNGC 4 cut(s) 323, 332, 360, 384
FspBI CTAG 2 cut(s) 138, 506
GluI GCNGC 4 cut(s) 323, 332, 360, 384
GsaI CCCAGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 38
HapII CCGG 2 cut(s) 156, 175
Hin1II CATG 3 cut(s) 43, 73, 505
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 3 cut(s) 23, 43, 178
HpaII CCGG 2 cut(s) 156, 175
Hpy166II GTNNAC 2 cut(s) 396, 410
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 396, 410
HpyAV CCTTC 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 322, 359
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 158, 322, 328, 331, 359, 368, 502
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 3 cut(s) 43, 73, 505
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 169, 180, 188, 287
Lsp1109I GCAGC 3 cut(s) 334, 370, 371
MaeI CTAG 2 cut(s) 138, 506
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 3 cut(s) 262, 388, 454
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 274, 335, 482
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 2 cut(s) 13, 414
MluNI TGGCCA 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 2 cut(s) 125, 431
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 2 cut(s) 156, 175
MspR9I CCNGG 2 cut(s) 156, 157
MwoI GCNNNNNNNGC 8 cut(s) 35, 158, 322, 328, 331, 359, 368, 502
NciI CCSGG 2 cut(s) 156, 157
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 43, 73, 505
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 2 cut(s) 73, 505
PfeI GAWTC 3 cut(s) 23, 43, 178
PkrI GCNGC 4 cut(s) 324, 333, 361, 385
PsiI TTATAA 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 301
PstI CTGCAG 1 cut(s) 324
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 4 cut(s) 323, 332, 360, 384
Sau3AI GATC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 156, 157
SetI ASST 5 cut(s) 327, 339, 364, 395, 463
SfcI CTRYAG 1 cut(s) 320
SmaI CCCGGG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 13, 414
SsiI CCGC 2 cut(s) 29, 332
SspMI CTAG 2 cut(s) 138, 506
StyD4I CCNGG 2 cut(s) 154, 155
TaiI ACGT 1 cut(s) 395
TasI AATT 2 cut(s) 13, 414
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 3 cut(s) 23, 43, 178
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 322, 359, 383
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 17, 56, 93
TspMI CCCGGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 13
XceI RCATGY 2 cut(s) 73, 505
XmaI CCCGGG 1 cut(s) 155
XspI CTAG 2 cut(s) 138, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.