AT3G08580

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001633
Physical Location & Seq
Reverse (-)
2605435 .. 2607895
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08580.2

Sequence Viewer

Length: 1146 bp
ATGGTTGATCAAGTTCAGCACCCCACTATTGCGCAGAAAGCTGCCGGGCAGTTCATGCGTTCAAGTGTTTCCAAGGACGTTCAAGTGGGTTACCAGAGGCCTTCTATGTATCAAAGACATGCAACCTACGGAAACTACTCCAATGCTGCATTTCAATTTCCTCCGACATCCCGGATGTTGGCAACAACTGCTTCTCCCGTGTTTGTCCAAACCCCAGGAGAGAAGGGGTTCACTAACTTTGCCCTTGACTTTCTGATGGGTGGTGTTTCTGCTGCCGTCTCCAAGACTGCTGCTGCTCCTATTGAACGTGTTAAGCTTTTGATCCAGAACCAGGATGAGATGATTAAAGCTGGCAGGCTTTCTGAACCCTACAAGGGTATTGGTGACTGTTTCGGCAGGACGATTAAGGATGAAGGTTTTGGTTCTCTATGGAGAGGAAACACTGCCAATGTTATCCGTTATTTCCCCACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAAAGACTTTTCAACTTTAAGAAGGACAGAGATGGTTACTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGAGGAGCAGCTGGTGCCTCTTCCCTTCTGTTTGTGTACTCCCTTGACTATGCCCGTACCCGTCTAGCTAATGATGCCAAGGCTGCAAAGAAAGGAGGTGGTGGAAGACAGTTTGATGGTCTTGTTGATGTCTACAGAAAGACACTTAAGACTGATGGTATTGCTGGTCTGTACCGTGGATTCAACATCTCATGTGTTGGTATCATTGTCTACCGTGGTCTGTACTTTGGACTCTATGACTCTGTGAAGCCTGTTCTCCTCACTGGTGACTTACAGGACAGTTTCTTCGCTAGTTTCGCTCTTGGATGGGTTATTACCAATGGTGCGGGTCTTGCATCCTACCCCATTGACACTGTCCGCAGAAGAATGATGATGACGTCTGGTGAAGCTGTCAAGTACAAGAGTTCTTTGGACGCCTTCAAGCAGATCCTCAAGAATGAAGGAGCCAAGTCACTCTTCAAGGGAGCTGGTGCCAACATTCTGCGTGCTGTTGCAGGTGCTGGTGTGCTTTCCGGTTACGACAAATTGCAGCTGATTGTCTTCGGTAAGAAGTACGGATCAGGAGGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

381

Amino Acids

41.48

Weight (kDa)

9.84

Isoelectric Point (pI)

20.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 79 - 175 1.6e-25 Mitochondrial carrier protein
Mito_carr PF00153 183 - 278 7.1e-21 Mitochondrial carrier protein
Mito_carr PF00153 284 - 372 9.6e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1058
AatII GACGTC 1 cut(s) 953
Acc16I TGCGCA 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 1058
AccB1I GGYRCC 3 cut(s) 587, 1043, 1139
AccI GTMKAC 2 cut(s) 705, 783
AciI CCGC 2 cut(s) 899, 931
AclWI GGATC 3 cut(s) 316, 994, 1138
AcyI GRCGYC 2 cut(s) 950, 987
AfaI GTAC 6 cut(s) 611, 631, 746, 797, 971, 1127
AfiI CCNNNNNNNGG 4 cut(s) 178, 331, 374, 472
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 307
AjnI CCWGG 2 cut(s) 214, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AluBI AGCT 8 cut(s) 41, 316, 350, 584, 641, 962, 1040, 1105
AluI AGCT 8 cut(s) 41, 316, 350, 584, 641, 962, 1040, 1105
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 3 cut(s) 316, 994, 1138
AlwNI CAGNNNCTG 1 cut(s) 1073
AoxI GGCC 2 cut(s) 98, 474
ApeKI GCWGC 8 cut(s) 41, 146, 272, 290, 293, 581, 656, 1102
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 34
AsuC2I CCSGG 2 cut(s) 46, 172
AsuHPI GGTGA 3 cut(s) 395, 851, 968
BanI GGYRCC 3 cut(s) 587, 1043, 1139
BbsI GAAGAC 2 cut(s) 685, 1105
BbvI GCAGC 8 cut(s) 28, 133, 259, 277, 280, 593, 643, 1114
BccI CCATC 5 cut(s) 250, 530, 683, 722, 873
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 216, 332
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 2 cut(s) 46, 172
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 2 cut(s) 638, 864
BfmI CTRYAG 1 cut(s) 706
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1058
BisI GCNGC 8 cut(s) 42, 147, 273, 291, 294, 582, 657, 1103
BlsI GCNGC 8 cut(s) 43, 148, 274, 292, 295, 583, 658, 1104
Bme1390I CCNGG 4 cut(s) 46, 172, 216, 332
BmiI GGNNCC 4 cut(s) 589, 1018, 1045, 1141
BmrFI CCNGG 4 cut(s) 46, 172, 216, 332
BmsI GCATC 3 cut(s) 578, 637, 917
BpiI GAAGAC 2 cut(s) 685, 1105
BpmI CTGGAG 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 2 cut(s) 46, 172
BsaHI GRCGYC 2 cut(s) 950, 987
BsaJI CCNNGG 5 cut(s) 72, 214, 651, 748, 787
BsaWI WCCGGW 1 cut(s) 1085
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 331, 374, 472
Bse1I ACTGG 2 cut(s) 548, 841
BseBI CCWGG 2 cut(s) 216, 332
BseDI CCNNGG 5 cut(s) 72, 214, 651, 748, 787
BseGI GGATG 6 cut(s) 167, 180, 340, 415, 884, 908
BseLI CCNNNNNNNGG 4 cut(s) 178, 331, 374, 472
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 548, 841
BseRI GAGGAG 2 cut(s) 591, 821
BseXI GCAGC 8 cut(s) 28, 133, 259, 277, 280, 593, 643, 1114
BshFI GGCC 2 cut(s) 100, 476
BshNI GGYRCC 3 cut(s) 587, 1043, 1139
BsiSI CCGG 3 cut(s) 45, 172, 1086
BslI CCNNNNNNNGG 4 cut(s) 178, 331, 374, 472
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsnI GGCC 2 cut(s) 100, 476
Bsp143I GATC 4 cut(s) 7, 321, 999, 1130
BspACI CCGC 2 cut(s) 899, 931
BspANI GGCC 2 cut(s) 100, 476
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 589, 1018, 1045, 1141
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 3 cut(s) 316, 994, 1138
BspT107I GGYRCC 3 cut(s) 587, 1043, 1139
BspTI CTTAAG 1 cut(s) 719
BsrI ACTGG 2 cut(s) 548, 841
BssECI CCNNGG 5 cut(s) 72, 214, 651, 748, 787
BssMI GATC 4 cut(s) 7, 321, 999, 1130
BssNI GRCGYC 2 cut(s) 950, 987
BssT1I CCWWGG 2 cut(s) 72, 651
Bst2UI CCWGG 2 cut(s) 216, 332
Bst4CI ACNGT 6 cut(s) 389, 684, 749, 788, 854, 928
Bst6I CTCTTC 2 cut(s) 598, 1034
BstACI GRCGYC 2 cut(s) 950, 987
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 3 cut(s) 55, 188, 587
BstC8I GCNNGC 3 cut(s) 352, 356, 1059
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 2 cut(s) 748, 787
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 6 cut(s) 167, 180, 340, 415, 884, 908
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 4 cut(s) 10, 324, 1002, 1133
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 7, 321, 999, 1130
BstMWI GCNNNNNNNGC 8 cut(s) 38, 55, 188, 587, 647, 656, 869, 905
BstNI CCWGG 2 cut(s) 216, 332
BstNSI RCATGY 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 4 cut(s) 44, 170, 214, 330
BstSFI CTRYAG 1 cut(s) 706
BstV1I GCAGC 8 cut(s) 28, 133, 259, 277, 280, 593, 643, 1114
BstV2I GAAGAC 2 cut(s) 685, 1105
BstX2I RGATCY 1 cut(s) 999
BstYI RGATCY 1 cut(s) 999
BsuRI GGCC 2 cut(s) 100, 476
BtgI CCRYGG 2 cut(s) 748, 787
BtsCI GGATG 6 cut(s) 167, 180, 340, 415, 884, 908
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 441, 834, 924
BveI ACCTGC 1 cut(s) 1058
Cac8I GCNNGC 3 cut(s) 352, 356, 1059
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 1 cut(s) 34
CseI GACGC 1 cut(s) 995
Csp6I GTAC 6 cut(s) 610, 630, 745, 796, 970, 1126
CviAII CATG 3 cut(s) 55, 119, 765
CviQI GTAC 6 cut(s) 610, 630, 745, 796, 970, 1126
DdeI CTNAG 1 cut(s) 471
DpnI GATC 4 cut(s) 9, 323, 1001, 1132
DpnII GATC 4 cut(s) 7, 321, 999, 1130
Eam1104I CTCTTC 2 cut(s) 598, 1034
EarI CTCTTC 2 cut(s) 598, 1034
Eco130I CCWWGG 2 cut(s) 72, 651
Eco147I AGGCCT 2 cut(s) 100, 476
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 214, 330
EcoT14I CCWWGG 2 cut(s) 72, 651
ErhI CCWWGG 2 cut(s) 72, 651
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 58, 122, 768
FaiI YATR 7 cut(s) 56, 107, 120, 430, 624, 766, 810
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FatI CATG 3 cut(s) 54, 118, 764
FauI CCCGC 1 cut(s) 892
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 2 cut(s) 705, 783
Fnu4HI GCNGC 8 cut(s) 42, 147, 273, 291, 294, 582, 657, 1103
FokI GGATG 6 cut(s) 154, 187, 347, 422, 891, 895
Fsp4HI GCNGC 8 cut(s) 42, 147, 273, 291, 294, 582, 657, 1103
FspBI CTAG 2 cut(s) 638, 864
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 1 cut(s) 33
GluI GCNGC 8 cut(s) 42, 147, 273, 291, 294, 582, 657, 1103
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 100, 476
HapII CCGG 3 cut(s) 45, 172, 1086
HgaI GACGC 1 cut(s) 995
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 2 cut(s) 950, 987
Hin1II CATG 3 cut(s) 58, 122, 768
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 753, 804, 812
HpaII CCGG 3 cut(s) 45, 172, 1086
HphI GGTGA 3 cut(s) 395, 851, 968
Hpy166II GTNNAC 4 cut(s) 231, 610, 706, 784
Hpy188I TCNGA 3 cut(s) 165, 255, 364
Hpy188III TCNNGA 4 cut(s) 325, 573, 1006, 1134
Hpy8I GTNNAC 4 cut(s) 231, 610, 706, 784
HpyAV CCTTC 8 cut(s) 111, 217, 407, 499, 520, 608, 1000, 1007
HpyCH4III ACNGT 6 cut(s) 389, 684, 749, 788, 854, 928
HpyCH4IV ACGT 3 cut(s) 78, 307, 950
HpyCH4V TGCA 6 cut(s) 122, 149, 659, 908, 1067, 1102
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 55, 188, 587, 647, 656, 869, 905
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 3 cut(s) 78, 307, 950
Hsp92I GRCGYC 2 cut(s) 950, 987
Hsp92II CATG 3 cut(s) 58, 122, 768
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 321, 999, 1130
LmnI GCTCC 4 cut(s) 301, 578, 1016, 1037
Lsp1109I GCAGC 8 cut(s) 28, 133, 259, 277, 280, 593, 643, 1114
LweI GCATC 3 cut(s) 578, 637, 917
MaeI CTAG 2 cut(s) 638, 864
MaeII ACGT 3 cut(s) 78, 307, 950
MaeIII GTNAC 7 cut(s) 89, 383, 539, 560, 839, 1023, 1088
MalI GATC 4 cut(s) 9, 323, 1001, 1132
MboI GATC 4 cut(s) 7, 321, 999, 1130
MboII GAAGA 6 cut(s) 585, 690, 850, 948, 1021, 1105
MflI RGATCY 1 cut(s) 999
MluCI AATT 2 cut(s) 155, 1097
MlyI GAGTC 2 cut(s) 798, 806
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 9 cut(s) 90, 171, 428, 569, 601, 662, 842, 1013, 1130
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 5 cut(s) 312, 345, 405, 522, 720
MspA1I CMGCKG 2 cut(s) 584, 1105
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 3 cut(s) 45, 172, 1086
MspR9I CCNGG 4 cut(s) 46, 172, 216, 332
MvaI CCWGG 2 cut(s) 216, 332
MwoI GCNNNNNNNGC 8 cut(s) 38, 55, 188, 587, 647, 656, 869, 905
NciI CCSGG 2 cut(s) 46, 172
NdeII GATC 4 cut(s) 7, 321, 999, 1130
NlaIII CATG 3 cut(s) 58, 122, 768
NlaIV GGNNCC 4 cut(s) 589, 1018, 1045, 1141
NmuCI GTSAC 3 cut(s) 383, 839, 1023
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 1 cut(s) 122
PaqCI CACCTGC 1 cut(s) 1058
PceI AGGCCT 2 cut(s) 100, 476
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 753
PflFI GACNNNGTC 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 8 cut(s) 43, 148, 274, 292, 295, 583, 658, 1104
PleI GAGTC 2 cut(s) 798, 806
PpsI GAGTC 2 cut(s) 798, 806
Psp6I CCWGG 2 cut(s) 214, 330
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 214, 330
PspN4I GGNNCC 4 cut(s) 589, 1018, 1045, 1141
PstNI CAGNNNCTG 1 cut(s) 1073
PsuI RGATCY 1 cut(s) 999
PsyI GACNNNGTC 1 cut(s) 926
PvuII CAGCTG 2 cut(s) 584, 1105
RsaI GTAC 6 cut(s) 611, 631, 746, 797, 971, 1127
RsaNI GTAC 6 cut(s) 610, 630, 745, 796, 970, 1126
SaqAI TTAA 5 cut(s) 312, 345, 405, 522, 720
SatI GCNGC 8 cut(s) 42, 147, 273, 291, 294, 582, 657, 1103
Sau3AI GATC 4 cut(s) 7, 321, 999, 1130
SchI GAGTC 2 cut(s) 798, 806
ScrFI CCNGG 4 cut(s) 46, 172, 216, 332
SfaNI GCATC 3 cut(s) 578, 637, 917
SfcI CTRYAG 1 cut(s) 706
SmlI CTYRAG 2 cut(s) 719, 1004
SmoI CTYRAG 2 cut(s) 719, 1004
Sse9I AATT 2 cut(s) 155, 1097
SseBI AGGCCT 2 cut(s) 100, 476
SsiI CCGC 2 cut(s) 899, 931
SspMI CTAG 2 cut(s) 638, 864
StuI AGGCCT 2 cut(s) 100, 476
StyD4I CCNGG 4 cut(s) 44, 170, 214, 330
StyI CCWWGG 2 cut(s) 72, 651
TaaI ACNGT 6 cut(s) 389, 684, 749, 788, 854, 928
TaiI ACGT 3 cut(s) 81, 310, 953
TasI AATT 2 cut(s) 155, 1097
TatI WGTACW 3 cut(s) 609, 795, 969
TfiI GAWTC 1 cut(s) 753
Tru1I TTAA 5 cut(s) 312, 345, 405, 522, 720
Tru9I TTAA 5 cut(s) 312, 345, 405, 522, 720
TscAI CASTG 3 cut(s) 448, 841, 931
TseFI GTSAC 3 cut(s) 383, 839, 1023
TseI GCWGC 8 cut(s) 41, 146, 272, 290, 293, 581, 656, 1102
Tsp45I GTSAC 3 cut(s) 383, 839, 1023
TspDTI ATGAA 3 cut(s) 43, 426, 1026
TspGWI ACGGA 3 cut(s) 144, 446, 1143
TspRI CASTG 3 cut(s) 448, 841, 931
Tth111I GACNNNGTC 1 cut(s) 926
Vha464I CTTAAG 1 cut(s) 719
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 2 cut(s) 705, 783
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 638, 864
ZraI GACGTC 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.