MD03G1178500.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
24547995 .. 24550824
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1178500.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGCTGATAGGCGCCAGCACCCAACTATCACGGAAAAGTTTTCTGGTCATGAGCTACATCTGAGTTCCAGCCACTATGGGGTCATCCAGAGGCCTTCTATCAATCAAAGGCGTTTTTCATATGGAAGTTATTCAAATGCAGCATTGCAATATCCCATGAACCAAGCATGTCGAGCTAATGATCCGTTGGTGGCTTCACGTTCCTTGCCTGTCTGTGTCGAAGCCCCGAAGGAGAAAGGATTTTCAGGCTTTGCAATTGATTTTCTAATGGGTGGAGTTTCTGCTGCTGTATCCAAGACTGCTGCTGCTCCAATTGAGCGCGTAAAGCTCTTAATTCAAAATCAGGATGAGATGATCAAGGCTGGCAGGCTCTCTGAACCCTACAAGGGAATTGGAGATTGTTTTAGCCGAACAATGAAAGATGAGGGAATGGTAGCATTGTGGAGAGGAAACACGGCAAATGTCATCCGTTACTTCCCAACTCAGGCCTTAAACTTCGCGTTTAAAGATTACTTCAAGAGCCTGTTCAATTTCAGAAAGGACAAGGATGGCTATTGGAAATGGTTTGCCGGTAACTTGGCATCTGGAGGTGCTGCGGGTGCCTCTTCTCTATTCTTTGTCTACTCTTTGGATTATGCTCGTACCCGTCTTGCAAATGATTCCAAGGCTGCAAAGAAGGGAGGAGAGAGGCAATTCAATGGCCTGGTTGATGTCTACAAAAAGACTCTCAAATCAGATGGCATTGCTGGCCTCTACCGCGGCTTCAACATTTCTTGTGTCGGAATCATTGTTTACCGTGGTCTTTACTTTGGAATGTATGATTCTTTGAAGCCTGTGATCCTCACTGGAAAGTTGCAGGATAGTTTCTTTGCTAGCTTTGGCCTTGGTTGGGTTATCACCAACGGCGCTGGACTTGCATCTTACCCAATTGACACTGTCCGTAGAAGGATGATGATGACATCTGGTGAAGCCGTCAAGTACAAGAGCTCGCTCGACGCTTTCTCTCAAATCCTTAAGAATGAGGGTGCGAGGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTTCGTGCAGTTGCTGGCGCGGGTGTGCTTGCAGGTTACGACAAGCTTCAGGTGCTAGTGTTCGGAAAGAAGTATGGTTCTGGTGGAGCTTAA

Protein Analysis

385

Amino Acids

42.01

Weight (kDa)

9.77

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 84 - 178 6e-25 Mitochondrial carrier protein
Mito_carr PF00153 187 - 281 3.4e-21 Mitochondrial carrier protein
Mito_carr PF00153 287 - 376 3.3e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1085
AccB1I GGYRCC 2 cut(s) 12, 599
AccI GTMKAC 2 cut(s) 621, 714
AccII CGCG 4 cut(s) 321, 500, 759, 1082
AciI CCGC 4 cut(s) 596, 757, 759, 1082
AclWI GGATC 2 cut(s) 176, 832
AcuI CTGAAG 1 cut(s) 1094
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 643, 980
AfiI CCNNNNNNNGG 4 cut(s) 79, 386, 484, 889
AflII CTTAAG 1 cut(s) 1013
AgsI TTSAA 8 cut(s) 135, 338, 517, 529, 697, 766, 829, 1042
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 7 cut(s) 55, 176, 328, 876, 987, 1108, 1151
AluI AGCT 7 cut(s) 55, 176, 328, 876, 987, 1108, 1151
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 1 cut(s) 1038
AlwI GGATC 2 cut(s) 176, 832
AlwNI CAGNNNCTG 1 cut(s) 1076
AoxI GGCC 5 cut(s) 92, 486, 700, 748, 880
ApeKI GCWGC 6 cut(s) 140, 284, 302, 305, 593, 668
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 4 cut(s) 15, 321, 908, 1082
AsuHPI GGTGA 2 cut(s) 889, 977
AsuNHI GCTAGC 1 cut(s) 872
BanI GGYRCC 2 cut(s) 12, 599
BanII GRGCYC 1 cut(s) 989
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 6 cut(s) 152, 271, 289, 292, 580, 655
BccI CCATC 2 cut(s) 542, 731
BceAI ACGGC 3 cut(s) 471, 919, 956
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 301
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 1038
BfaI CTAG 2 cut(s) 873, 1118
BfoI RGCGCY 2 cut(s) 16, 909
BfrI CTTAAG 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 1085
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 7 cut(s) 141, 285, 303, 306, 594, 669, 760
BlsI GCNGC 7 cut(s) 142, 286, 304, 307, 595, 670, 761
Bme1390I CCNGG 1 cut(s) 704
BmiI GGNNCC 2 cut(s) 14, 601
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 2 cut(s) 590, 926
BmtI GCTAGC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 4 cut(s) 663, 757, 796, 883
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 386, 484, 889
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 850
Bse3DI GCAATG 2 cut(s) 143, 741
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 4 cut(s) 663, 757, 796, 883
BseGI GGATG 5 cut(s) 84, 352, 465, 553, 954
BseLI CCNNNNNNNGG 4 cut(s) 79, 386, 484, 889
BseMI GCAATG 2 cut(s) 143, 741
BseMII CTCAG 2 cut(s) 53, 497
BseNI ACTGG 1 cut(s) 850
BseRI GAGGAG 1 cut(s) 696
BseXI GCAGC 6 cut(s) 152, 271, 289, 292, 580, 655
BsgI GTGCAG 1 cut(s) 1089
Bsh1236I CGCG 4 cut(s) 321, 500, 759, 1082
BshFI GGCC 5 cut(s) 94, 488, 702, 750, 882
BshNI GGYRCC 2 cut(s) 12, 599
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 1 cut(s) 570
BslI CCNNNNNNNGG 4 cut(s) 79, 386, 484, 889
BsmAI GTCTC 1 cut(s) 1038
BsnI GGCC 5 cut(s) 94, 488, 702, 750, 882
Bso31I GGTCTC 1 cut(s) 1038
Bsp1286I GDGCHC 1 cut(s) 989
Bsp143I GATC 3 cut(s) 181, 354, 837
BspACI CCGC 4 cut(s) 596, 757, 759, 1082
BspANI GGCC 5 cut(s) 94, 488, 702, 750, 882
BspCNI CTCAG 2 cut(s) 54, 496
BspFNI CGCG 4 cut(s) 321, 500, 759, 1082
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 14, 601
BspMI ACCTGC 1 cut(s) 1085
BspOI GCTAGC 1 cut(s) 876
BspPI GGATC 2 cut(s) 176, 832
BspT107I GGYRCC 2 cut(s) 12, 599
BspTI CTTAAG 1 cut(s) 1013
BspTNI GGTCTC 1 cut(s) 1038
BsrDI GCAATG 2 cut(s) 143, 741
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 1 cut(s) 850
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 4 cut(s) 663, 757, 796, 883
BssMI GATC 3 cut(s) 181, 354, 837
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 663, 883
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 2 cut(s) 797, 937
Bst6I CTCTTC 2 cut(s) 610, 1043
BstACI GRCGYC 1 cut(s) 13
BstAFI CTTAAG 1 cut(s) 1013
BstC8I GCNNGC 8 cut(s) 17, 364, 368, 748, 874, 989, 1078, 1092
BstDEI CTNAG 2 cut(s) 62, 483
BstDSI CCRYGG 2 cut(s) 757, 796
BstF5I GGATG 5 cut(s) 84, 352, 465, 553, 954
BstFNI CGCG 4 cut(s) 321, 500, 759, 1082
BstH2I RGCGCY 2 cut(s) 16, 909
BstHHI GCGC 4 cut(s) 15, 321, 908, 1082
BstKTI GATC 3 cut(s) 184, 357, 840
BstMAI GTCTC 1 cut(s) 1038
BstMBI GATC 3 cut(s) 181, 354, 837
BstMWI GCNNNNNNNGC 7 cut(s) 173, 325, 599, 747, 756, 914, 1114
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 702
BstUI CGCG 4 cut(s) 321, 500, 759, 1082
BstV1I GCAGC 6 cut(s) 152, 271, 289, 292, 580, 655
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 5 cut(s) 94, 488, 702, 750, 882
BtgI CCRYGG 2 cut(s) 757, 796
BtsCI GGATG 5 cut(s) 84, 352, 465, 553, 954
BtsIMutI CAGTG 2 cut(s) 843, 933
BveI ACCTGC 1 cut(s) 1085
Cac8I GCNNGC 8 cut(s) 17, 364, 368, 748, 874, 989, 1078, 1092
CaiI CAGNNNCTG 1 cut(s) 1076
CciI TCATGA 1 cut(s) 49
CfoI GCGC 4 cut(s) 15, 321, 908, 1082
Cfr10I RCCGGY 1 cut(s) 569
Cfr42I CCGCGG 1 cut(s) 760
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 2 cut(s) 642, 979
CviAII CATG 3 cut(s) 50, 157, 168
CviQI GTAC 2 cut(s) 642, 979
DdeI CTNAG 2 cut(s) 62, 483
DinI GGCGCC 1 cut(s) 14
DpnI GATC 3 cut(s) 183, 356, 839
DpnII GATC 3 cut(s) 181, 354, 837
DraI TTTAAA 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 610, 1043
EarI CTCTTC 2 cut(s) 610, 1043
Ecl136II GAGCTC 1 cut(s) 987
Eco130I CCWWGG 2 cut(s) 663, 883
Eco147I AGGCCT 2 cut(s) 94, 488
Eco24I GRGCYC 1 cut(s) 989
Eco31I GGTCTC 1 cut(s) 1038
Eco53kI GAGCTC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 1094
EcoICRI GAGCTC 1 cut(s) 987
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 663, 883
EcoT38I GRGCYC 1 cut(s) 989
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 2 cut(s) 663, 883
FaeI CATG 3 cut(s) 53, 160, 171
FaiI YATR 9 cut(s) 51, 78, 121, 123, 158, 169, 636, 819, 1137
FatI CATG 3 cut(s) 49, 156, 167
FauI CCCGC 2 cut(s) 589, 1075
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 2 cut(s) 621, 714
Fnu4HI GCNGC 7 cut(s) 141, 285, 303, 306, 594, 669, 760
FokI GGATG 5 cut(s) 71, 359, 452, 560, 961
FriOI GRGCYC 1 cut(s) 989
Fsp4HI GCNGC 7 cut(s) 141, 285, 303, 306, 594, 669, 760
FspBI CTAG 2 cut(s) 873, 1118
GlaI GCGC 4 cut(s) 14, 320, 907, 1081
GluI GCNGC 7 cut(s) 141, 285, 303, 306, 594, 669, 760
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 2 cut(s) 16, 909
HaeIII GGCC 5 cut(s) 94, 488, 702, 750, 882
HapII CCGG 1 cut(s) 570
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 4 cut(s) 15, 321, 908, 1082
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 53, 160, 171
Hin6I GCGC 4 cut(s) 13, 319, 906, 1080
HinP1I GCGC 4 cut(s) 13, 319, 906, 1080
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 4 cut(s) 659, 724, 783, 821
HpaII CCGG 1 cut(s) 570
HphI GGTGA 2 cut(s) 889, 977
Hpy166II GTNNAC 3 cut(s) 622, 715, 793
Hpy188I TCNGA 6 cut(s) 63, 376, 536, 736, 782, 1127
Hpy188III TCNNGA 5 cut(s) 50, 88, 344, 517, 585
Hpy8I GTNNAC 3 cut(s) 622, 715, 793
Hpy99I CGWCG 1 cut(s) 998
HpyAV CCTTC 4 cut(s) 105, 223, 670, 939
HpyCH4III ACNGT 2 cut(s) 797, 937
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 9 cut(s) 140, 148, 254, 653, 671, 856, 917, 1070, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 173, 325, 599, 747, 756, 914, 1114
HpyF3I CTNAG 2 cut(s) 62, 483
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 53, 160, 171
HspAI GCGC 4 cut(s) 13, 319, 906, 1080
KasI GGCGCC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 354
KspI CCGCGG 1 cut(s) 760
Kzo9I GATC 3 cut(s) 181, 354, 837
LmnI GCTCC 2 cut(s) 313, 1148
Lsp1109I GCAGC 6 cut(s) 152, 271, 289, 292, 580, 655
LweI GCATC 2 cut(s) 590, 926
MaeI CTAG 2 cut(s) 873, 1118
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 470, 572, 1097
MalI GATC 3 cut(s) 183, 356, 839
MboI GATC 3 cut(s) 181, 354, 837
MboII GAAGA 3 cut(s) 597, 1030, 1055
MfeI CAATTG 3 cut(s) 255, 312, 927
MhlI GDGCHC 1 cut(s) 989
MluCI AATT 7 cut(s) 255, 312, 333, 390, 529, 692, 927
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 5 cut(s) 332, 491, 504, 1014, 1153
MspA1I CMGCKG 1 cut(s) 759
MspCI CTTAAG 1 cut(s) 1013
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 704
MunI CAATTG 3 cut(s) 255, 312, 927
MvaI CCWGG 1 cut(s) 704
MvnI CGCG 4 cut(s) 321, 500, 759, 1082
MwoI GCNNNNNNNGC 7 cut(s) 173, 325, 599, 747, 756, 914, 1114
NarI GGCGCC 1 cut(s) 13
NdeI CATATG 1 cut(s) 121
NdeII GATC 3 cut(s) 181, 354, 837
NheI GCTAGC 1 cut(s) 872
NlaIII CATG 3 cut(s) 53, 160, 171
NlaIV GGNNCC 2 cut(s) 14, 601
NspI RCATGY 1 cut(s) 171
PagI TCATGA 1 cut(s) 49
PceI AGGCCT 2 cut(s) 94, 488
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 659, 783, 821
PflFI GACNNNGTC 1 cut(s) 935
PkrI GCNGC 7 cut(s) 142, 286, 304, 307, 595, 670, 761
PleI GAGTC 1 cut(s) 718
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 718
Psp124BI GAGCTC 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 2 cut(s) 14, 601
PstNI CAGNNNCTG 1 cut(s) 1076
PsyI GACNNNGTC 1 cut(s) 935
RsaI GTAC 2 cut(s) 643, 980
RsaNI GTAC 2 cut(s) 642, 979
SacI GAGCTC 1 cut(s) 989
SacII CCGCGG 1 cut(s) 760
SaqAI TTAA 5 cut(s) 332, 491, 504, 1014, 1153
SatI GCNGC 7 cut(s) 141, 285, 303, 306, 594, 669, 760
Sau3AI GATC 3 cut(s) 181, 354, 837
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 989
SfaNI GCATC 2 cut(s) 590, 926
SfoI GGCGCC 1 cut(s) 14
Sfr303I CCGCGG 1 cut(s) 760
SgrBI CCGCGG 1 cut(s) 760
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
Sse9I AATT 7 cut(s) 255, 312, 333, 390, 529, 692, 927
SseBI AGGCCT 2 cut(s) 94, 488
SsiI CCGC 4 cut(s) 596, 757, 759, 1082
SspDI GGCGCC 1 cut(s) 12
SspMI CTAG 2 cut(s) 873, 1118
SstI GAGCTC 1 cut(s) 989
StuI AGGCCT 2 cut(s) 94, 488
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 663, 883
TaaI ACNGT 2 cut(s) 797, 937
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 172, 219, 993
TasI AATT 7 cut(s) 255, 312, 333, 390, 529, 692, 927
TatI WGTACW 1 cut(s) 978
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 3 cut(s) 659, 783, 821
Tru1I TTAA 5 cut(s) 332, 491, 504, 1014, 1153
Tru9I TTAA 5 cut(s) 332, 491, 504, 1014, 1153
TscAI CASTG 2 cut(s) 850, 940
TseI GCWGC 6 cut(s) 140, 284, 302, 305, 593, 668
TspDTI ATGAA 3 cut(s) 108, 173, 431
TspGWI ACGGA 4 cut(s) 47, 174, 458, 929
TspRI CASTG 2 cut(s) 850, 940
Tth111I GACNNNGTC 1 cut(s) 935
Vha464I CTTAAG 1 cut(s) 1013
XceI RCATGY 1 cut(s) 171
XmiI GTMKAC 2 cut(s) 621, 714
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 2 cut(s) 873, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.