Rmu_ssc0000154.1_g000011

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000154.1
OG0001633
Physical Location & Seq
Forward (+)
55758 .. 60797
5040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000154.1_g000011.1.cds

Sequence Viewer

Length: 1413 bp
atgaacagtgttctaaaactcggctgcctaggcactgggcgtcggctctccaactctagtagtgtcaaatcggagcttttgggtgggctaaggttgggcggccgttcaggcggcctaggagggcgactaggcgctacacagttggctaggcgggtggttaagaaagaattaaggttggatagccctctgcgaagagctcaaggcggagaccctcgcagccttcaatcgctcttcattttcttcagaggagacgcaatggttgatcaggttcaacaccctactgtcatgcaaaaggtagctggccagctccttcagcaatccattcagggatatgatactggcttccaaagacaggggatgtaccagagacgtcctgcatatggaaattactccaatgctgcattgcaatatcccatgatgccagcttgcagagctaccactgatctgtccatgattccatcaactgcatccccagtttttgtgcaagcccccgcagagaaaagccactttgccattgatttccttatgggtggtgtttctgctgctgtatctaagaccgctgctgctcccattgagcgtgtcaagcttttgattcagaaccaggatgaaatgatcaagtctggtcggttgtctcaaccctacaagggcattggtgagtgcttctccagaacaatcaaggaagaaggatttggttcattgtggagaggaaacactgccaacgtcatccgttacttccccactcaggcgttgaactttgcattcaaggattacttcaagaggctattcaatttcaagaaagacagggatggttattggaagtggtttgctggtaacttggcctcaggaggtgcggctggtgcttcttctcttttctttgtctactctttggactatgctcgtacccgtttggctaatgattctaaggctgcaaagaagggtggagagagacaattcaatggtctgattgatgtctacaagaagacattgaaatctgatggtattgctggtctataccgtggattcaatatatcatgtgttggtatcattgtttaccgtggtttgtacttcggactgtatgattcactcaagcctgtggtcctaacgggaggtttacaggatagtttctttgctagctttgctcttggatgggtcatcactaatggtgctggtcttgcttcctacccaattgacactgttcgtagaagaatgatgatgacctccggtgaagccgtcaagtacaagagttcttttgatgccttcactcagatcttgaagaatgagggtgctaagtccctgttcaagggtgctggtgcaaacatcctccgtgccattgctggtgctggtgtcctttctggttatgataagttgcagctgattgtgttcgggaagaagtatggttctggatctggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

470

Amino Acids

51.15

Weight (kDa)

10.05

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 879, 972
AciI CCGC 7 cut(s) 99, 111, 151, 204, 492, 558, 851
AclWI GGATC 1 cut(s) 1411
AcoI YGGCCR 2 cut(s) 100, 301
AcuI CTGAAG 2 cut(s) 226, 296
AcyI GRCGYC 2 cut(s) 40, 370
AfaI GTAC 4 cut(s) 362, 901, 1064, 1238
AfiI CCNNNNNNNGG 5 cut(s) 352, 380, 644, 742, 1300
AjnI CCWGG 1 cut(s) 600
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 9 cut(s) 76, 197, 299, 307, 425, 434, 586, 1134, 1372
AluI AGCT 9 cut(s) 76, 197, 299, 307, 425, 434, 586, 1134, 1372
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 5 cut(s) 201, 243, 361, 636, 940
AlwI GGATC 1 cut(s) 1411
AoxI GGCC 4 cut(s) 100, 112, 301, 837
ApeKI GCWGC 8 cut(s) 24, 216, 398, 542, 560, 563, 926, 1369
AspA2I CCTAGG 2 cut(s) 28, 115
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 1096
AsuHPI GGTGA 2 cut(s) 665, 1235
AsuNHI GCTAGC 1 cut(s) 1130
AvaII GGWCC 1 cut(s) 1096
AvrII CCTAGG 2 cut(s) 28, 115
AxyI CCTNAGG 1 cut(s) 841
BalI TGGCCA 1 cut(s) 303
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 8 cut(s) 11, 228, 385, 529, 547, 550, 913, 1381
BccI CCATC 4 cut(s) 466, 800, 989, 1140
BceAI ACGGC 2 cut(s) 87, 1214
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 2 cut(s) 262, 612
BcoDI GTCTC 5 cut(s) 201, 243, 361, 636, 940
BfaI CTAG 6 cut(s) 29, 57, 116, 128, 147, 1131
BfoI RGCGCY 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 108
BglII AGATCT 1 cut(s) 1266
BlnI CCTAGG 2 cut(s) 28, 115
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 1 cut(s) 1096
BmgT120I GGNCC 1 cut(s) 1096
BmrFI CCNGG 1 cut(s) 602
BmrI ACTGGG 2 cut(s) 45, 467
BmsI GCATC 3 cut(s) 408, 476, 1243
BmtI GCTAGC 1 cut(s) 1134
BmuI ACTGGG 2 cut(s) 45, 467
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 649
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 183, 1070
BsaHI GRCGYC 2 cut(s) 40, 370
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 4 cut(s) 28, 115, 1015, 1054
BsaWI WCCGGW 1 cut(s) 1220
Bsc4I CCNNNNNNNGG 5 cut(s) 352, 380, 644, 742, 1300
Bse1I ACTGG 3 cut(s) 40, 343, 473
Bse21I CCTNAGG 1 cut(s) 841
Bse3DI GCAATG 3 cut(s) 261, 401, 1329
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 4 cut(s) 28, 115, 1015, 1054
BseGI GGATG 7 cut(s) 363, 467, 610, 723, 811, 1151, 1317
BseLI CCNNNNNNNGG 5 cut(s) 352, 380, 644, 742, 1300
BseMI GCAATG 3 cut(s) 261, 401, 1329
BseMII CTCAG 3 cut(s) 755, 855, 1277
BseNI ACTGG 3 cut(s) 40, 343, 473
BseRI GAGGAG 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 8 cut(s) 11, 228, 385, 529, 547, 550, 913, 1381
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 4 cut(s) 102, 114, 303, 839
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 1221
BslFI GGGAC 1 cut(s) 1276
BslI CCNNNNNNNGG 5 cut(s) 352, 380, 644, 742, 1300
BsmAI GTCTC 5 cut(s) 201, 243, 361, 636, 940
BsmBI CGTCTC 2 cut(s) 243, 361
BsmFI GGGAC 1 cut(s) 1276
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 4 cut(s) 102, 114, 303, 839
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 5 cut(s) 262, 442, 612, 1266, 1403
BspACI CCGC 7 cut(s) 99, 111, 151, 204, 492, 558, 851
BspANI GGCC 4 cut(s) 102, 114, 303, 839
BspCNI CTCAG 3 cut(s) 754, 854, 1276
BspOI GCTAGC 1 cut(s) 1134
BspPI GGATC 1 cut(s) 1411
BspQI GCTCTTC 2 cut(s) 187, 236
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 3 cut(s) 261, 401, 1329
BsrI ACTGG 3 cut(s) 40, 343, 473
BssECI CCNNGG 4 cut(s) 28, 115, 1015, 1054
BssMI GATC 5 cut(s) 262, 442, 612, 1266, 1403
BssNI GRCGYC 2 cut(s) 40, 370
BssT1I CCWWGG 2 cut(s) 28, 115
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 7 cut(s) 8, 141, 283, 1016, 1055, 1074, 1195
Bst6I CTCTTC 2 cut(s) 187, 236
BstACI GRCGYC 2 cut(s) 40, 370
BstC8I GCNNGC 6 cut(s) 301, 305, 423, 427, 486, 1132
BstDEI CTNAG 7 cut(s) 89, 552, 741, 841, 921, 1263, 1287
BstDSI CCRYGG 2 cut(s) 1015, 1054
BstENI CCTNNNNNAGG 1 cut(s) 1298
BstF5I GGATG 7 cut(s) 363, 467, 610, 723, 811, 1151, 1317
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 5 cut(s) 265, 445, 615, 1269, 1406
BstMAI GTCTC 5 cut(s) 201, 243, 361, 636, 940
BstMBI GATC 5 cut(s) 262, 442, 612, 1266, 1403
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 8 cut(s) 30, 108, 313, 431, 583, 857, 1136, 1172
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 600
BstV1I GCAGC 8 cut(s) 11, 228, 385, 529, 547, 550, 913, 1381
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 2 cut(s) 1266, 1403
BstYI RGATCY 2 cut(s) 1266, 1403
BstZI CGGCCG 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 841
BsuRI GGCC 4 cut(s) 102, 114, 303, 839
BtgI CCRYGG 2 cut(s) 1015, 1054
BtsCI GGATG 7 cut(s) 363, 467, 610, 723, 811, 1151, 1317
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 5 cut(s) 13, 33, 438, 711, 1191
Cac8I GCNNGC 6 cut(s) 301, 305, 423, 427, 486, 1132
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 1096
CseI GACGC 2 cut(s) 29, 260
Csp6I GTAC 4 cut(s) 361, 900, 1063, 1237
CviAII CATG 4 cut(s) 286, 415, 451, 1032
CviQI GTAC 4 cut(s) 361, 900, 1063, 1237
DdeI CTNAG 7 cut(s) 89, 552, 741, 841, 921, 1263, 1287
DpnI GATC 5 cut(s) 264, 444, 614, 1268, 1405
DpnII GATC 5 cut(s) 262, 442, 612, 1266, 1403
EaeI YGGCCR 2 cut(s) 100, 301
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 187, 236
EarI CTCTTC 2 cut(s) 187, 236
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 28, 115
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 1096
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 226, 296
Eco81I CCTNAGG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 1298
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 28, 115
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 28, 115
Esp3I CGTCTC 2 cut(s) 243, 361
FaeI CATG 4 cut(s) 289, 418, 454, 1035
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 1 cut(s) 1276
FatI CATG 4 cut(s) 285, 414, 450, 1031
FauI CCCGC 2 cut(s) 144, 499
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 2 cut(s) 262, 612
FblI GTMKAC 2 cut(s) 879, 972
FokI GGATG 7 cut(s) 370, 454, 617, 710, 818, 1158, 1304
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 6 cut(s) 29, 57, 116, 128, 147, 1131
GlaI GCGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 649
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 4 cut(s) 102, 114, 303, 839
HapII CCGG 1 cut(s) 1221
HgaI GACGC 2 cut(s) 29, 260
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 2 cut(s) 40, 370
Hin1II CATG 4 cut(s) 289, 418, 454, 1035
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 5 cut(s) 454, 592, 917, 1020, 1079
HpaII CCGG 1 cut(s) 1221
HphI GGTGA 2 cut(s) 665, 1235
Hpy166II GTNNAC 4 cut(s) 880, 973, 1051, 1112
Hpy188I TCNGA 7 cut(s) 73, 245, 597, 963, 994, 1070, 1266
Hpy188III TCNNGA 7 cut(s) 666, 775, 793, 843, 1270, 1384, 1401
Hpy8I GTNNAC 4 cut(s) 880, 973, 1051, 1112
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 5 cut(s) 230, 320, 677, 928, 1267
HpyCH4III ACNGT 7 cut(s) 8, 141, 283, 1016, 1055, 1074, 1195
HpyCH4IV ACGT 2 cut(s) 370, 720
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 108, 313, 431, 583, 857, 1136, 1172
HpyF3I CTNAG 7 cut(s) 89, 552, 741, 841, 921, 1263, 1287
HpySE526I ACGT 2 cut(s) 370, 720
Hsp92I GRCGYC 2 cut(s) 40, 370
Hsp92II CATG 4 cut(s) 289, 418, 454, 1035
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 2 cut(s) 262, 612
Kzo9I GATC 5 cut(s) 262, 442, 612, 1266, 1403
LguI GCTCTTC 2 cut(s) 187, 236
LmnI GCTCC 3 cut(s) 73, 312, 571
Lsp1109I GCAGC 8 cut(s) 11, 228, 385, 529, 547, 550, 913, 1381
LweI GCATC 3 cut(s) 408, 476, 1243
MaeI CTAG 6 cut(s) 29, 57, 116, 128, 147, 1131
MaeII ACGT 2 cut(s) 370, 720
MaeIII GTNAC 2 cut(s) 728, 830
MalI GATC 5 cut(s) 264, 444, 614, 1268, 1405
MboI GATC 5 cut(s) 262, 442, 612, 1266, 1403
MboII GAAGA 9 cut(s) 204, 223, 232, 692, 855, 991, 1215, 1285, 1399
MfeI CAATTG 1 cut(s) 1185
MflI RGATCY 2 cut(s) 1266, 1403
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 5 cut(s) 167, 385, 787, 950, 1185
MluNI TGGCCA 1 cut(s) 303
MmeI TCCRAC 2 cut(s) 75, 156
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 3 cut(s) 159, 170, 1411
Msp20I TGGCCA 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 560, 1372
MspI CCGG 1 cut(s) 1221
MspR9I CCNGG 1 cut(s) 602
MunI CAATTG 1 cut(s) 1185
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 8 cut(s) 30, 108, 313, 431, 583, 857, 1136, 1172
NdeI CATATG 1 cut(s) 379
NdeII GATC 5 cut(s) 262, 442, 612, 1266, 1403
NheI GCTAGC 1 cut(s) 1130
NlaIII CATG 4 cut(s) 289, 418, 454, 1035
PciSI GCTCTTC 2 cut(s) 187, 236
PctI GAATGC 1 cut(s) 758
PfeI GAWTC 5 cut(s) 454, 592, 917, 1020, 1079
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 600
PspPI GGNCC 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 1266, 1403
PvuII CAGCTG 1 cut(s) 1372
RsaI GTAC 4 cut(s) 362, 901, 1064, 1238
RsaNI GTAC 4 cut(s) 361, 900, 1063, 1237
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 2 cut(s) 187, 236
SaqAI TTAA 3 cut(s) 159, 170, 1411
Sau3AI GATC 5 cut(s) 262, 442, 612, 1266, 1403
Sau96I GGNCC 1 cut(s) 1096
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 3 cut(s) 408, 476, 1243
SinI GGWCC 1 cut(s) 1096
SmlI CTYRAG 2 cut(s) 198, 1085
SmoI CTYRAG 2 cut(s) 198, 1085
Sse9I AATT 5 cut(s) 167, 385, 787, 950, 1185
SsiI CCGC 7 cut(s) 99, 111, 151, 204, 492, 558, 851
SspMI CTAG 6 cut(s) 29, 57, 116, 128, 147, 1131
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 2 cut(s) 28, 115
TaaI ACNGT 7 cut(s) 8, 141, 283, 1016, 1055, 1074, 1195
TaiI ACGT 2 cut(s) 373, 723
TasI AATT 5 cut(s) 167, 385, 787, 950, 1185
TatI WGTACW 2 cut(s) 1062, 1236
TauI GCSGC 3 cut(s) 102, 114, 854
TfiI GAWTC 5 cut(s) 454, 592, 917, 1020, 1079
Tru1I TTAA 3 cut(s) 159, 170, 1411
Tru9I TTAA 3 cut(s) 159, 170, 1411
TscAI CASTG 5 cut(s) 13, 40, 445, 718, 1198
TseI GCWGC 8 cut(s) 24, 216, 398, 542, 560, 563, 926, 1369
TspDTI ATGAA 4 cut(s) 17, 223, 621, 684
TspGWI ACGGA 2 cut(s) 716, 1313
TspRI CASTG 5 cut(s) 13, 40, 445, 718, 1198
VpaK11BI GGWCC 1 cut(s) 1096
XagI CCTNNNNNAGG 1 cut(s) 1298
XmaJI CCTAGG 2 cut(s) 28, 115
XmiI GTMKAC 2 cut(s) 879, 972
XspI CTAG 6 cut(s) 29, 57, 116, 128, 147, 1131
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.