RLG00000030729

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001633
Physical Location & Seq
Reverse (-)
66587141 .. 66590272
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030729

Sequence Viewer

Length: 1248 bp
ATGTTGGAACTTGGAACCAAAACCGAAGAGCTCAAGGCGGAGACCCGCGCAGCCTTCAATCGTTCCTTCATTTTCTTCAGAGGAGACGCAATGGTTGATCAGGTTCAACACCCTACTGTCATGCAAAAGGTAGCTGGCCAGCTCCTTCAGCAATCCATTCAGGGATATAATACTGGCTTCCAAAGACAGGGGATGTACCAGAGACGTCCTGCATACGGAAATTATTCCAATGCTGCATTGCAATATCCCATTATGCCAGCTTGCAGAGCTACCACTGATCTGTCCATGATTCCATCAACTGCATCCCCAGTTTTTGTCCAAGCCCCCGCAGAGAAAAGCCACTTTGTCATTGATTTCCTTATGGGTGGTGTTTCTGCTGCTGTATCCAAGACCGCTGCTGCTCCCATTGAGCGTGTCAAGCTTTTGATTCAGAACCAGGATGAAATGATCAAGTCTGGTCGATTGTCTCAACCCTACAAGGGCATAGGTGAGTGCTTCTCCAGAACAATCAAGGAAGAAGGATTTGGTTCATTGTGGAGAGGAAACACTGCCAACGTCATCCGTTACTTCCCCACTCAGGCGTTGAACTTTGCATTCAAGGATTACTTCAAGAGGCTATTCAATTTCAAGAAAGACAGGGATGGTTATTGGAAGTGGTTTGCTGGTAACTTGGCCTCAGGAGGTGCAGCTGGTGCTTCTTCTCTTTTCTTTGTCTACTCTTTGGACTATGCTCGTACCCGTTTGGCGAATGATTCTAAGGCTGCAAAGAAGGGAGGAGAGAGACAATTCAATGGTCTGATTGATGTCTACAAGAAGACATTGAAATCTGATGGCATTGCTGGTCTATACCGTGGATTCAATATATCATGTGTCGGTATCATTGTTTACCGTGGTTTGTACTTTGGACTGTATGATTCACTCAAGCCTGTTGTCCTAACGGGAGGTTTGCAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGATGGGTCATCACTAATGGTGCTGGTCTTGCTTCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACCTCCGGTGAAGCTGTTAAGTACAAGAGTTCTTTTGATGCCTTCACTCAGATCTTGAAGAATGAGGGTGCCAAGTCCCTTTTCAAGGGTGCTGGTGCAAACATCCTCCGTGCCATTGCTGGCGCTGGTGTCCTTTCTGGTTATGACAAGTTGCAGCTGCTTGTGTTTGGGAAGAAGTATGGTTCTGGATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

416

Amino Acids

45.58

Weight (kDa)

9.78

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 112 - 210 1.7e-26 Mitochondrial carrier protein
Mito_carr PF00153 218 - 311 6.1e-21 Mitochondrial carrier protein
Mito_carr PF00153 318 - 407 1.7e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 1118
AccI GTMKAC 2 cut(s) 714, 807
AccII CGCG 1 cut(s) 48
AciI CCGC 4 cut(s) 38, 46, 327, 393
AclWI GGATC 1 cut(s) 1246
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 2 cut(s) 61, 131
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 4 cut(s) 197, 736, 899, 1073
AfiI CCNNNNNNNGG 5 cut(s) 187, 215, 479, 577, 1135
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 4 cut(s) 507, 539, 1115, 1147
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 5 cut(s) 35, 78, 196, 471, 775
AlwI GGATC 1 cut(s) 1246
AoxI GGCC 2 cut(s) 136, 672
ApeKI GCWGC 9 cut(s) 50, 233, 377, 395, 398, 686, 761, 1204, 1207
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 2 cut(s) 50, 1175
AsuHPI GGTGA 2 cut(s) 500, 1070
AsuNHI GCTAGC 1 cut(s) 965
AxyI CCTNAGG 1 cut(s) 676
BalI TGGCCA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 1118
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 9 cut(s) 62, 220, 364, 382, 385, 698, 748, 1194, 1216
BccI CCATC 4 cut(s) 301, 635, 824, 975
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 2 cut(s) 97, 447
BcoDI GTCTC 5 cut(s) 35, 78, 196, 471, 775
BfaI CTAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 1176
BfuI GTATCC 1 cut(s) 394
BglII AGATCT 1 cut(s) 1101
BisI GCNGC 9 cut(s) 51, 234, 378, 396, 399, 687, 762, 1205, 1208
BlsI GCNGC 9 cut(s) 52, 235, 379, 397, 400, 688, 763, 1206, 1209
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 16, 1120
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 311, 1078
BmtI GCTAGC 1 cut(s) 969
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 821
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BpmI CTGGAG 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 17, 905
BsaHI GRCGYC 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 850, 889
BsaWI WCCGGW 1 cut(s) 1055
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 215, 479, 577, 1135
Bse1I ACTGG 2 cut(s) 178, 308
Bse21I CCTNAGG 1 cut(s) 676
Bse3DI GCAATG 4 cut(s) 96, 236, 834, 1164
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 850, 889
BseGI GGATG 7 cut(s) 198, 302, 445, 558, 646, 986, 1152
BseLI CCNNNNNNNGG 5 cut(s) 187, 215, 479, 577, 1135
BseMI GCAATG 4 cut(s) 96, 236, 834, 1164
BseMII CTCAG 3 cut(s) 590, 690, 1112
BseNI ACTGG 2 cut(s) 178, 308
BseRI GAGGAG 2 cut(s) 96, 789
BseXI GCAGC 9 cut(s) 62, 220, 364, 382, 385, 698, 748, 1194, 1216
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 138, 674
BshNI GGYRCC 1 cut(s) 1118
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 1056
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 5 cut(s) 187, 215, 479, 577, 1135
BsmAI GTCTC 5 cut(s) 35, 78, 196, 471, 775
BsmBI CGTCTC 2 cut(s) 78, 196
BsmFI GGGAC 1 cut(s) 1111
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 138, 674
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 5 cut(s) 97, 277, 447, 1101, 1238
BspACI CCGC 4 cut(s) 38, 46, 327, 393
BspANI GGCC 2 cut(s) 138, 674
BspCNI CTCAG 3 cut(s) 589, 689, 1111
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 16, 1120
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 1 cut(s) 1246
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 1118
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 4 cut(s) 96, 236, 834, 1164
BsrI ACTGG 2 cut(s) 178, 308
BssECI CCNNGG 2 cut(s) 850, 889
BssMI GATC 5 cut(s) 97, 277, 447, 1101, 1238
BssNI GRCGYC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 5 cut(s) 118, 851, 890, 909, 1030
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 136, 140, 258, 262, 967, 1171
BstDEI CTNAG 4 cut(s) 576, 676, 756, 1098
BstDSI CCRYGG 2 cut(s) 850, 889
BstENI CCTNNNNNAGG 1 cut(s) 1133
BstF5I GGATG 7 cut(s) 198, 302, 445, 558, 646, 986, 1152
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 2 cut(s) 50, 1175
BstKTI GATC 5 cut(s) 100, 280, 450, 1104, 1241
BstMAI GTCTC 5 cut(s) 35, 78, 196, 471, 775
BstMBI GATC 5 cut(s) 97, 277, 447, 1101, 1238
BstMWI GCNNNNNNNGC 6 cut(s) 148, 266, 418, 692, 971, 1007
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 435
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 9 cut(s) 62, 220, 364, 382, 385, 698, 748, 1194, 1216
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 2 cut(s) 1101, 1238
BstYI RGATCY 2 cut(s) 1101, 1238
Bsu36I CCTNAGG 1 cut(s) 676
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 138, 674
BtgI CCRYGG 2 cut(s) 850, 889
BtsCI GGATG 7 cut(s) 198, 302, 445, 558, 646, 986, 1152
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 273, 546, 1026
Cac8I GCNNGC 6 cut(s) 136, 140, 258, 262, 967, 1171
CfoI GCGC 2 cut(s) 50, 1175
CseI GACGC 1 cut(s) 95
Csp6I GTAC 4 cut(s) 196, 735, 898, 1072
CviAII CATG 3 cut(s) 121, 286, 867
CviQI GTAC 4 cut(s) 196, 735, 898, 1072
DdeI CTNAG 4 cut(s) 576, 676, 756, 1098
DpnI GATC 5 cut(s) 99, 279, 449, 1103, 1240
DpnII GATC 5 cut(s) 97, 277, 447, 1101, 1238
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 61, 131
Eco81I CCTNAGG 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 1133
EcoRII CCWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 78, 196
FaeI CATG 3 cut(s) 124, 289, 870
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FaqI GGGAC 1 cut(s) 1111
FatI CATG 3 cut(s) 120, 285, 866
FauI CCCGC 2 cut(s) 53, 334
FbaI TGATCA 2 cut(s) 97, 447
FblI GTMKAC 2 cut(s) 714, 807
Fnu4HI GCNGC 9 cut(s) 51, 234, 378, 396, 399, 687, 762, 1205, 1208
FokI GGATG 7 cut(s) 205, 289, 452, 545, 653, 993, 1139
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 9 cut(s) 51, 234, 378, 396, 399, 687, 762, 1205, 1208
FspBI CTAG 1 cut(s) 966
GlaI GCGC 2 cut(s) 49, 1174
GluI GCNGC 9 cut(s) 51, 234, 378, 396, 399, 687, 762, 1205, 1208
GsuI CTGGAG 1 cut(s) 484
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 2 cut(s) 138, 674
HapII CCGG 1 cut(s) 1056
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 50, 1175
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 3 cut(s) 124, 289, 870
Hin6I GCGC 2 cut(s) 48, 1173
HinP1I GCGC 2 cut(s) 48, 1173
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 5 cut(s) 289, 427, 752, 855, 914
HpaII CCGG 1 cut(s) 1056
HphI GGTGA 2 cut(s) 500, 1070
Hpy166II GTNNAC 3 cut(s) 715, 808, 886
Hpy188I TCNGA 5 cut(s) 80, 432, 798, 829, 1101
Hpy188III TCNNGA 6 cut(s) 501, 610, 628, 678, 1105, 1236
Hpy8I GTNNAC 3 cut(s) 715, 808, 886
HpyAV CCTTC 6 cut(s) 64, 76, 155, 512, 763, 1102
HpyCH4III ACNGT 5 cut(s) 118, 851, 890, 909, 1030
HpyCH4IV ACGT 2 cut(s) 205, 555
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 266, 418, 692, 971, 1007
HpyF3I CTNAG 4 cut(s) 576, 676, 756, 1098
HpySE526I ACGT 2 cut(s) 205, 555
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 3 cut(s) 124, 289, 870
HspAI GCGC 2 cut(s) 48, 1173
Ksp22I TGATCA 2 cut(s) 97, 447
Kzo9I GATC 5 cut(s) 97, 277, 447, 1101, 1238
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 147, 406
Lsp1109I GCAGC 9 cut(s) 62, 220, 364, 382, 385, 698, 748, 1194, 1216
LweI GCATC 2 cut(s) 311, 1078
MaeI CTAG 1 cut(s) 966
MaeII ACGT 2 cut(s) 205, 555
MaeIII GTNAC 2 cut(s) 563, 665
MalI GATC 5 cut(s) 99, 279, 449, 1103, 1240
MboI GATC 5 cut(s) 97, 277, 447, 1101, 1238
MboII GAAGA 8 cut(s) 38, 67, 527, 690, 826, 1050, 1120, 1234
MfeI CAATTG 1 cut(s) 1020
MflI RGATCY 2 cut(s) 1101, 1238
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 4 cut(s) 220, 622, 785, 1020
MluNI TGGCCA 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 1068, 1246
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 3 cut(s) 395, 689, 1207
MspI CCGG 1 cut(s) 1056
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 1 cut(s) 1020
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 6 cut(s) 148, 266, 418, 692, 971, 1007
NdeII GATC 5 cut(s) 97, 277, 447, 1101, 1238
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 3 cut(s) 124, 289, 870
NlaIV GGNNCC 2 cut(s) 16, 1120
PciSI GCTCTTC 1 cut(s) 21
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 5 cut(s) 289, 427, 752, 855, 914
PkrI GCNGC 9 cut(s) 52, 235, 379, 397, 400, 688, 763, 1206, 1209
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 2 cut(s) 16, 1120
PsuI RGATCY 2 cut(s) 1101, 1238
PvuII CAGCTG 2 cut(s) 689, 1207
RsaI GTAC 4 cut(s) 197, 736, 899, 1073
RsaNI GTAC 4 cut(s) 196, 735, 898, 1072
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 1068, 1246
SatI GCNGC 9 cut(s) 51, 234, 378, 396, 399, 687, 762, 1205, 1208
Sau3AI GATC 5 cut(s) 97, 277, 447, 1101, 1238
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 2 cut(s) 311, 1078
SmlI CTYRAG 2 cut(s) 32, 920
SmoI CTYRAG 2 cut(s) 32, 920
Sse9I AATT 4 cut(s) 220, 622, 785, 1020
SsiI CCGC 4 cut(s) 38, 46, 327, 393
SspMI CTAG 1 cut(s) 966
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 5 cut(s) 118, 851, 890, 909, 1030
TaiI ACGT 2 cut(s) 208, 558
TaqI TCGA 1 cut(s) 460
TasI AATT 4 cut(s) 220, 622, 785, 1020
TatI WGTACW 2 cut(s) 897, 1071
TfiI GAWTC 5 cut(s) 289, 427, 752, 855, 914
Tru1I TTAA 2 cut(s) 1068, 1246
Tru9I TTAA 2 cut(s) 1068, 1246
TscAI CASTG 3 cut(s) 280, 553, 1033
TseI GCWGC 9 cut(s) 50, 233, 377, 395, 398, 686, 761, 1204, 1207
TspDTI ATGAA 3 cut(s) 58, 456, 519
TspGWI ACGGA 3 cut(s) 231, 551, 1148
TspRI CASTG 3 cut(s) 280, 553, 1033
XagI CCTNNNNNAGG 1 cut(s) 1133
XmiI GTMKAC 2 cut(s) 714, 807
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 966
ZraI GACGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.