Rh1AG017100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001633
Physical Location & Seq
Forward (+)
2925965 .. 2929468
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG017100.1

Sequence Viewer

Length: 1188 bp
ATGTTTTTGGTTTTACTTGTAGGAGACGCAATGGTTGATCAGGTTCAACACCCTACTGTCATGCAAAAGGTAGCTGGCCAGCTCCTTCAGCAATCCATTCAGGGTTATGATACTGGCTTCCAAAGACAGGGGATGTACCAGAGACGTCCTGCATATGGAAATTACTCCAATGCTGCATTGCAATATTCCATGATGCCAGCTTGCAGAGCTACCACTGATCTGTCCATGATTCCATCAACTGCATCCCCAGTTTTTGTGCAAGCCCCTGCAGAGAAAAGCCACTTTGCCATTGATTTCCTTATGGGTGGTGTTTCTGCTGCTGTATCTAAGACCGCTGCTGCTCCCATTGAGCGTGTCAAGCTTTTGATTCAGAACCAGGATGAAATGATCAAGTCTGGTCGGTTGTCTCAACCCTACAAGGGCATTGGTGAGTGCTTCTCCAGAACAATCAAGGAAGAAGGATTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTACTTCCCCACTCAGGCGTTGAACTTTGCATTCAAGGATTACTTCAAGAGGCTATTCAATTTCAAGAAAGACAGGGATGGTTATTGGAAGTGGTTTGCTGGTAACTTGGCCTCAGGAGGTGCGGCTGGTGCTTCTTCTCTTTTCTTTGTCTACTCTTTGGACTATGCTCGTACCCGTTTGGCTAATGATTCTAAGGCTGCAAAGAAGGGTGGAGAGAGACAATTCAATGGTCTGATTGATGTGTACAAGAAGACATTGAAATCTGATGGTATTGCTGGTCTATACCGTGGATTCAATATATCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGACTGTATGATTCACTCAAGCCTGTGGTCCTAACGGGAGGTTTACAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGATGGGTCATCACTAATGGTGCTGGTCTTGCTTCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACCTCCGGTGAAGCCGTCAAGTACAAGAGTTCTTTTGATGCCTTCACTCAGATCTTGAAGAATGAGGGTGCCAAGTCCCTGTTCAAGGGTGCTGGTGCAAACATCCTCCGTGCCATTGCTGGTGCTGGTGTCCTTTCTGGTTATGACAAGTTGCAGCTGATTGTGTTCGGGAAGAAGTATGGTTCTGGATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

395

Amino Acids

43.19

Weight (kDa)

9.73

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 92 - 190 1.9e-26 Mitochondrial carrier protein
Mito_carr PF00153 198 - 291 5.5e-21 Mitochondrial carrier protein
Mito_carr PF00153 298 - 386 2.1e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 1058
AccI GTMKAC 1 cut(s) 654
AciI CCGC 2 cut(s) 333, 626
AclWI GGATC 1 cut(s) 1186
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 5 cut(s) 137, 676, 749, 839, 1013
AfiI CCNNNNNNNGG 5 cut(s) 127, 155, 419, 517, 1075
AjnI CCWGG 1 cut(s) 375
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 1055, 1087
AluBI AGCT 7 cut(s) 74, 82, 200, 209, 361, 909, 1147
AluI AGCT 7 cut(s) 74, 82, 200, 209, 361, 909, 1147
Alw26I GTCTC 4 cut(s) 18, 136, 411, 715
AlwI GGATC 1 cut(s) 1186
AoxI GGCC 2 cut(s) 76, 612
ApeKI GCWGC 6 cut(s) 173, 317, 335, 338, 701, 1144
AspS9I GGNCC 1 cut(s) 871
AsuHPI GGTGA 2 cut(s) 440, 1010
AsuNHI GCTAGC 1 cut(s) 905
AvaII GGWCC 1 cut(s) 871
AxyI CCTNAGG 1 cut(s) 616
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 761
BbvI GCAGC 6 cut(s) 160, 304, 322, 325, 688, 1156
BccI CCATC 4 cut(s) 241, 575, 764, 915
BceAI ACGGC 1 cut(s) 989
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 2 cut(s) 37, 387
BcoDI GTCTC 4 cut(s) 18, 136, 411, 715
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 1041
BisI GCNGC 7 cut(s) 174, 318, 336, 339, 627, 702, 1145
BlsI GCNGC 7 cut(s) 175, 319, 337, 340, 628, 703, 1146
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 871
BmiI GGNNCC 1 cut(s) 1060
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 183, 251, 1018
BmtI GCTAGC 1 cut(s) 909
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 761
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 845
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 790, 829
BsaWI WCCGGW 1 cut(s) 995
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 155, 419, 517, 1075
Bse1I ACTGG 2 cut(s) 118, 248
Bse21I CCTNAGG 1 cut(s) 616
Bse3DI GCAATG 3 cut(s) 36, 176, 1104
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 790, 829
BseGI GGATG 7 cut(s) 138, 242, 385, 498, 586, 926, 1092
BseLI CCNNNNNNNGG 5 cut(s) 127, 155, 419, 517, 1075
BseMI GCAATG 3 cut(s) 36, 176, 1104
BseMII CTCAG 3 cut(s) 530, 630, 1052
BseNI ACTGG 2 cut(s) 118, 248
BseXI GCAGC 6 cut(s) 160, 304, 322, 325, 688, 1156
BshFI GGCC 2 cut(s) 78, 614
BshNI GGYRCC 1 cut(s) 1058
BsiSI CCGG 1 cut(s) 996
BslFI GGGAC 1 cut(s) 1051
BslI CCNNNNNNNGG 5 cut(s) 127, 155, 419, 517, 1075
BsmAI GTCTC 4 cut(s) 18, 136, 411, 715
BsmBI CGTCTC 2 cut(s) 18, 136
BsmFI GGGAC 1 cut(s) 1051
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 2 cut(s) 78, 614
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 5 cut(s) 37, 217, 387, 1041, 1178
BspACI CCGC 2 cut(s) 333, 626
BspANI GGCC 2 cut(s) 78, 614
BspCNI CTCAG 3 cut(s) 529, 629, 1051
BspLI GGNNCC 1 cut(s) 1060
BspMAI CTGCAG 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 909
BspPI GGATC 1 cut(s) 1186
BspT107I GGYRCC 1 cut(s) 1058
BsrDI GCAATG 3 cut(s) 36, 176, 1104
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 118, 248
BssECI CCNNGG 2 cut(s) 790, 829
BssMI GATC 5 cut(s) 37, 217, 387, 1041, 1178
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 5 cut(s) 58, 791, 830, 849, 970
BstACI GRCGYC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 747
BstC8I GCNNGC 6 cut(s) 76, 80, 198, 202, 261, 907
BstDEI CTNAG 5 cut(s) 327, 516, 616, 696, 1038
BstDSI CCRYGG 2 cut(s) 790, 829
BstENI CCTNNNNNAGG 1 cut(s) 1073
BstF5I GGATG 7 cut(s) 138, 242, 385, 498, 586, 926, 1092
BstKTI GATC 5 cut(s) 40, 220, 390, 1044, 1181
BstMAI GTCTC 4 cut(s) 18, 136, 411, 715
BstMBI GATC 5 cut(s) 37, 217, 387, 1041, 1178
BstMWI GCNNNNNNNGC 6 cut(s) 88, 206, 358, 632, 911, 947
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 6 cut(s) 160, 304, 322, 325, 688, 1156
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 2 cut(s) 1041, 1178
BstYI RGATCY 2 cut(s) 1041, 1178
Bsu36I CCTNAGG 1 cut(s) 616
BsuRI GGCC 2 cut(s) 78, 614
BtgI CCRYGG 2 cut(s) 790, 829
BtsCI GGATG 7 cut(s) 138, 242, 385, 498, 586, 926, 1092
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 3 cut(s) 213, 486, 966
Cac8I GCNNGC 6 cut(s) 76, 80, 198, 202, 261, 907
Cfr13I GGNCC 1 cut(s) 871
CseI GACGC 1 cut(s) 35
Csp6I GTAC 5 cut(s) 136, 675, 748, 838, 1012
CviAII CATG 4 cut(s) 61, 190, 226, 807
CviQI GTAC 5 cut(s) 136, 675, 748, 838, 1012
DdeI CTNAG 5 cut(s) 327, 516, 616, 696, 1038
DpnI GATC 5 cut(s) 39, 219, 389, 1043, 1180
DpnII GATC 5 cut(s) 37, 217, 387, 1041, 1178
EaeI YGGCCR 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 871
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 616
EcoNI CCTNNNNNAGG 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 375
Esp3I CGTCTC 2 cut(s) 18, 136
FaeI CATG 4 cut(s) 64, 193, 229, 810
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 1051
FatI CATG 4 cut(s) 60, 189, 225, 806
FauNDI CATATG 1 cut(s) 154
FbaI TGATCA 2 cut(s) 37, 387
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 7 cut(s) 174, 318, 336, 339, 627, 702, 1145
FokI GGATG 7 cut(s) 145, 229, 392, 485, 593, 933, 1079
Fsp4HI GCNGC 7 cut(s) 174, 318, 336, 339, 627, 702, 1145
FspBI CTAG 1 cut(s) 906
GluI GCNGC 7 cut(s) 174, 318, 336, 339, 627, 702, 1145
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 2 cut(s) 78, 614
HapII CCGG 1 cut(s) 996
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 4 cut(s) 64, 193, 229, 810
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 5 cut(s) 229, 367, 692, 795, 854
HpaII CCGG 1 cut(s) 996
HphI GGTGA 2 cut(s) 440, 1010
Hpy166II GTNNAC 4 cut(s) 655, 748, 826, 887
Hpy188I TCNGA 4 cut(s) 372, 738, 769, 1041
Hpy188III TCNNGA 7 cut(s) 441, 550, 568, 618, 1045, 1159, 1176
Hpy8I GTNNAC 4 cut(s) 655, 748, 826, 887
HpyAV CCTTC 4 cut(s) 95, 452, 703, 1042
HpyCH4III ACNGT 5 cut(s) 58, 791, 830, 849, 970
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 206, 358, 632, 911, 947
HpyF3I CTNAG 5 cut(s) 327, 516, 616, 696, 1038
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 4 cut(s) 64, 193, 229, 810
Ksp22I TGATCA 2 cut(s) 37, 387
Kzo9I GATC 5 cut(s) 37, 217, 387, 1041, 1178
LmnI GCTCC 2 cut(s) 87, 346
Lsp1109I GCAGC 6 cut(s) 160, 304, 322, 325, 688, 1156
LweI GCATC 3 cut(s) 183, 251, 1018
MaeI CTAG 1 cut(s) 906
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 503, 605
MalI GATC 5 cut(s) 39, 219, 389, 1043, 1180
MboI GATC 5 cut(s) 37, 217, 387, 1041, 1178
MboII GAAGA 6 cut(s) 467, 630, 766, 990, 1060, 1174
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 2 cut(s) 1041, 1178
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 4 cut(s) 160, 562, 725, 960
MluNI TGGCCA 1 cut(s) 78
MnlI CCTC 8 cut(s) 473, 546, 614, 625, 875, 1003, 1048, 1106
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 1186
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 2 cut(s) 335, 1147
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 6 cut(s) 88, 206, 358, 632, 911, 947
NdeI CATATG 1 cut(s) 154
NdeII GATC 5 cut(s) 37, 217, 387, 1041, 1178
NheI GCTAGC 1 cut(s) 905
NlaIII CATG 4 cut(s) 64, 193, 229, 810
NlaIV GGNNCC 1 cut(s) 1060
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 5 cut(s) 229, 367, 692, 795, 854
PkrI GCNGC 7 cut(s) 175, 319, 337, 340, 628, 703, 1146
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 1060
PspPI GGNCC 1 cut(s) 871
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 1041, 1178
PvuII CAGCTG 1 cut(s) 1147
RsaI GTAC 5 cut(s) 137, 676, 749, 839, 1013
RsaNI GTAC 5 cut(s) 136, 675, 748, 838, 1012
SaqAI TTAA 1 cut(s) 1186
SatI GCNGC 7 cut(s) 174, 318, 336, 339, 627, 702, 1145
Sau3AI GATC 5 cut(s) 37, 217, 387, 1041, 1178
Sau96I GGNCC 1 cut(s) 871
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 3 cut(s) 183, 251, 1018
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 4 cut(s) 160, 562, 725, 960
SsiI CCGC 2 cut(s) 333, 626
SspI AATATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 5 cut(s) 58, 791, 830, 849, 970
TaiI ACGT 1 cut(s) 148
TasI AATT 4 cut(s) 160, 562, 725, 960
TatI WGTACW 3 cut(s) 747, 837, 1011
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 5 cut(s) 229, 367, 692, 795, 854
Tru1I TTAA 1 cut(s) 1186
Tru9I TTAA 1 cut(s) 1186
TscAI CASTG 3 cut(s) 220, 493, 973
TseI GCWGC 6 cut(s) 173, 317, 335, 338, 701, 1144
TspDTI ATGAA 2 cut(s) 396, 459
TspGWI ACGGA 2 cut(s) 491, 1088
TspRI CASTG 3 cut(s) 220, 493, 973
VpaK11BI GGWCC 1 cut(s) 871
XagI CCTNNNNNAGG 1 cut(s) 1073
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 1 cut(s) 906
ZraI GACGTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.