Rmu_sc0023933.1_g000005

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023933.1
OG0001633
Physical Location & Seq
Forward (+)
27230 .. 28482
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023933.1_g000005.1.cds

Sequence Viewer

Length: 804 bp
atgatcaagtctggtcggttgtctcaaccctacaagggcattggtgagtgcttctccagaacaatcaaggaagaaggatttggttcattgtggagaggaaacactgccaacgtcatccgttacttccccactcaggccttgaactttgcattcaaggattacttcaagaggctattcaatttcaagaaagacagggatggttattggaagtggtttgctggtaacttggcctcaggaggtgcggctggtgcttcttctcttttctttgtctactctttggactatgctcgtacccgtttggctaatgattctaaggctgcaaagaagggtggagagagacaattcaatggtctgattgatgtgtacaagaagacattgaaatctgatggtattgctggtctataccgtggattcaatatatcatgtgttggtatcattgtttaccgtggtttgtactttggactgtatgattcactcaagcctgtggtcctaacgggaggtttacaggatagtttctttgctagctttgctcttggatgggtcatcactaatggtgccggtcttgcttcctacccaattgacactgttcgtagaagaatgatgatgacctccggtgaggccgtcaagtacaagagttcttttgatgccttcactcagatcttgaagaatgagggtgccaagtccctgttcaagggtgctggtgcaaacatcctccgtgccattgctggtgctggtgtcctttctggttatgacaagttgcagctgattgtgtttgggaagaagtatggttctggatctggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

267

Amino Acids

29.25

Weight (kDa)

9.91

Isoelectric Point (pI)

19.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 554, 674
AccI GTMKAC 1 cut(s) 270
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 802
AfaI GTAC 4 cut(s) 292, 365, 455, 629
AfiI CCNNNNNNNGG 3 cut(s) 35, 133, 691
AjuI GAANNNNNNNTTGG 4 cut(s) 63, 95, 671, 703
AluBI AGCT 2 cut(s) 525, 763
AluI AGCT 2 cut(s) 525, 763
Alw26I GTCTC 2 cut(s) 27, 331
AlwI GGATC 1 cut(s) 802
AoxI GGCC 3 cut(s) 135, 228, 618
ApeKI GCWGC 2 cut(s) 317, 760
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 56, 626
AsuNHI GCTAGC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 487
AxyI CCTNAGG 1 cut(s) 232
BanI GGYRCC 2 cut(s) 554, 674
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 2 cut(s) 304, 772
BccI CCATC 3 cut(s) 191, 380, 531
BceAI ACGGC 1 cut(s) 605
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 27, 331
BfaI CTAG 1 cut(s) 522
BglII AGATCT 1 cut(s) 657
BisI GCNGC 3 cut(s) 243, 318, 761
BlsI GCNGC 3 cut(s) 244, 319, 762
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 2 cut(s) 556, 676
BmsI GCATC 1 cut(s) 634
BmtI GCTAGC 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 406, 445
BsaWI WCCGGW 1 cut(s) 611
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 133, 691
Bse118I RCCGGY 1 cut(s) 557
Bse21I CCTNAGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 720
BseDI CCNNGG 2 cut(s) 406, 445
BseGI GGATG 4 cut(s) 114, 202, 542, 708
BseLI CCNNNNNNNGG 3 cut(s) 35, 133, 691
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 3 cut(s) 146, 246, 668
BseXI GCAGC 2 cut(s) 304, 772
BshFI GGCC 3 cut(s) 137, 230, 620
BshNI GGYRCC 2 cut(s) 554, 674
BsiSI CCGG 2 cut(s) 558, 612
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 3 cut(s) 35, 133, 691
BsmAI GTCTC 2 cut(s) 27, 331
BsmFI GGGAC 1 cut(s) 667
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 3 cut(s) 137, 230, 620
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 3 cut(s) 3, 657, 794
BspACI CCGC 1 cut(s) 242
BspANI GGCC 3 cut(s) 137, 230, 620
BspCNI CTCAG 3 cut(s) 145, 245, 667
BspLI GGNNCC 2 cut(s) 556, 676
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 802
BspT107I GGYRCC 2 cut(s) 554, 674
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 1 cut(s) 557
BsrGI TGTACA 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 406, 445
BssMI GATC 3 cut(s) 3, 657, 794
Bst4CI ACNGT 4 cut(s) 407, 446, 465, 586
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 4 cut(s) 132, 232, 312, 654
BstDSI CCRYGG 2 cut(s) 406, 445
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 4 cut(s) 114, 202, 542, 708
BstKTI GATC 3 cut(s) 6, 660, 797
BstMAI GTCTC 2 cut(s) 27, 331
BstMBI GATC 3 cut(s) 3, 657, 794
BstMWI GCNNNNNNNGC 3 cut(s) 248, 527, 563
BstV1I GCAGC 2 cut(s) 304, 772
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 657, 794
BstYI RGATCY 2 cut(s) 657, 794
Bsu36I CCTNAGG 1 cut(s) 232
BsuRI GGCC 3 cut(s) 137, 230, 620
BtgI CCRYGG 2 cut(s) 406, 445
BtsCI GGATG 4 cut(s) 114, 202, 542, 708
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 582
Cac8I GCNNGC 1 cut(s) 523
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 4 cut(s) 291, 364, 454, 628
CviAII CATG 1 cut(s) 423
CviQI GTAC 4 cut(s) 291, 364, 454, 628
DdeI CTNAG 4 cut(s) 132, 232, 312, 654
DpnI GATC 3 cut(s) 5, 659, 796
DpnII GATC 3 cut(s) 3, 657, 794
Eco147I AGGCCT 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 487
Eco81I CCTNAGG 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 689
FaeI CATG 1 cut(s) 426
FaiI YATR 7 cut(s) 285, 403, 419, 424, 468, 750, 786
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 667
FatI CATG 1 cut(s) 422
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 243, 318, 761
FokI GGATG 4 cut(s) 101, 209, 549, 695
Fsp4HI GCNGC 3 cut(s) 243, 318, 761
FspBI CTAG 1 cut(s) 522
GluI GCNGC 3 cut(s) 243, 318, 761
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 3 cut(s) 137, 230, 620
HapII CCGG 2 cut(s) 558, 612
Hin1II CATG 1 cut(s) 426
HinfI GANTC 3 cut(s) 308, 411, 470
HpaII CCGG 2 cut(s) 558, 612
HphI GGTGA 2 cut(s) 56, 626
Hpy166II GTNNAC 4 cut(s) 271, 364, 442, 503
Hpy188I TCNGA 3 cut(s) 354, 385, 657
Hpy188III TCNNGA 6 cut(s) 57, 166, 184, 234, 661, 792
Hpy8I GTNNAC 4 cut(s) 271, 364, 442, 503
HpyAV CCTTC 3 cut(s) 68, 319, 658
HpyCH4III ACNGT 4 cut(s) 407, 446, 465, 586
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 149, 320, 704, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 527, 563
HpyF3I CTNAG 4 cut(s) 132, 232, 312, 654
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 657, 794
Lsp1109I GCAGC 2 cut(s) 304, 772
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 119, 221
MalI GATC 3 cut(s) 5, 659, 796
MboI GATC 3 cut(s) 3, 657, 794
MboII GAAGA 6 cut(s) 83, 246, 382, 606, 676, 790
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 657, 794
MluCI AATT 3 cut(s) 178, 341, 576
MnlI CCTC 9 cut(s) 89, 162, 230, 241, 491, 610, 619, 664, 722
MseI TTAA 1 cut(s) 802
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 2 cut(s) 558, 612
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 248, 527, 563
NdeII GATC 3 cut(s) 3, 657, 794
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 1 cut(s) 426
NlaIV GGNNCC 2 cut(s) 556, 676
PceI AGGCCT 1 cut(s) 137
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 308, 411, 470
PkrI GCNGC 3 cut(s) 244, 319, 762
PspN4I GGNNCC 2 cut(s) 556, 676
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 2 cut(s) 657, 794
PvuII CAGCTG 1 cut(s) 763
RsaI GTAC 4 cut(s) 292, 365, 455, 629
RsaNI GTAC 4 cut(s) 291, 364, 454, 628
SaqAI TTAA 1 cut(s) 802
SatI GCNGC 3 cut(s) 243, 318, 761
Sau3AI GATC 3 cut(s) 3, 657, 794
Sau96I GGNCC 1 cut(s) 487
SetI ASST 6 cut(s) 114, 241, 502, 527, 611, 765
SfaNI GCATC 1 cut(s) 634
SinI GGWCC 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 3 cut(s) 178, 341, 576
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 522
StuI AGGCCT 1 cut(s) 137
TaaI ACNGT 4 cut(s) 407, 446, 465, 586
TaiI ACGT 1 cut(s) 114
TasI AATT 3 cut(s) 178, 341, 576
TatI WGTACW 3 cut(s) 363, 453, 627
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 3 cut(s) 308, 411, 470
Tru1I TTAA 1 cut(s) 802
Tru9I TTAA 1 cut(s) 802
TscAI CASTG 2 cut(s) 109, 589
TseI GCWGC 2 cut(s) 317, 760
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 2 cut(s) 107, 704
TspRI CASTG 2 cut(s) 109, 589
VpaK11BI GGWCC 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.