Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001633

Physical Location & Seq

Genomic Coordinates Forward (+)

34078984 .. 34081926

Gene Structure 2943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCTGATAAGCACCAGAGCCCAACTGTTATCCAAAAGTTTGCTGGTCAGCTACATCTAGGTTCCACTCTTTCTCAAGATATCCACAGCCAGAGCCACTATGGCGGCTTCCAGAGGCCTAATCTCAATCAAAGGCGTTTTGCATATGGAAATTATTCTAATGCAGCATTGCAGTATCCTATGAACCATGCATGTGGAGCAACTGATCGGTCATTGATCAGTTCCACTACCTCACCTCTGCTTGTCCAAGCCCCATCAGAGAAAGGATTTGCGGGCTTTGCCACTGATTTTCTAATGGGTGGAGTTTCAGCCGCTGTGTCCAAGACTGCTGCTGCTCCAATTGAGCGCGTAAAGCTGTTGATTCAAAACCAGGATGAGATGCTCAAGGCTGGCAGGCTTTCTGAACCCTACAAGGGAATTGGGGATTGTTTTAGCCGAACAATAAAAGATGAGGGAATGGTGTCCCTGTGGAGAGGGAACACAGCTAATGTCATCCGTTACTTCCCAACTCAGGCCTTAAACTTTGCATTCAAAGATTACTTCAAGAAGCTTTTCAACTTCAAAAAGGACAGGGATGGCTACTGGAAATGGTTTGCAGGAAACTTAGCATCTGGTGGTGCTGCTGGTGCCTCTTCTTTATTTTTTGTTTACTCTTTGGATTATGCTCGTACCCGCCTTGCAAATGATGCCAAAGCTGCTAAGAAGGGAGGCGGTGGGAGACAATTCAATGGCCTGGTTGATGTCTACAGAAAGACTCTCGCATCAGATGGTATTGCTGGTCTTTACCGCGGTTTCAACATTTCTTGTGTTGGCATCATTGTGTACCGTGGTCTATACTTTGGAATGTATGATTCTTTGAAGCCTGTGCTCCTCACTGGAAAGATGCAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGGTTATCACCAATGGTGCCGGTCTTGCATCTTACCCAATTGACACTATCCGTAGAAGGATGATGATGACTTCTGGTGAAGCGGTCAAATACAAGGGCTCACTCGATTGCTTCAATCAAGTCATGAAGAATGAGGGTGCAAAGTCCCTCTTCAAGGGTGCCGGTGCCAATATTCTTCGTGCAATTGCTGGTGCTGGTGTGCTTGCAGGTTATGACAAGCTTCAGGTGCTGGTGTTTGGAAAGAAGTATGGCTCTGGTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

394

Amino Acids

42.77

Weight (kDa)

9.77

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	93 - 188	1.3e-25	Mitochondrial carrier protein
Mito_carr	PF00153	196 - 291	3.2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	297 - 386	2.3e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08580 AT3G08580 AT5G13490 AT5G13490
fragaria_vesca	FvH4_3g29080 FvH4_3g29080 FvH4_3g29080 FvH4_7g00912 FvH4_7g00912 FvH4_7g00920
malus_domestica	MD00G1204500.v1.1 MD03G1178500.v1.1 MD07G1008900.v1.1 MD07G1009000.v1.1 MD07G1009200.v1.1 MD11G1198100.v1.1
prunus_persica	Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.4G244400_v2.0.a1 Prupe.4G244400_v2.0.a1
pyrus_communis	pycom03g13500 pycom07g00770
rosa_chinensis	RchiOBHm_Chr1g0315841 RchiOBHm_Chr1g0315851 RchiOBHm_Chr5g0051451
rosa_laevigata	RLG00000030729 RLG00000034875
rosa_multiflora	Rmu_co8322969.1_g000001 Rmu_sc0022189.1_g000005 Rmu_sc0023933.1_g000005 Rmu_ssc0000154.1_g000011 Rmu_ssc0000154.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027060 Rroxscaffold_4G00331380 Rroxscaffold_4G00331400
rosa_rugosa	Rorug01G0006100 Rorug01G0006100 Rorug01G0006200 Rorug05G0279300 Rorug05G0279400 Rorug05G0279500 Rorug05G0279600
rosa_samantha	Rh1AG017100 Rh1AG017200 Rh5CG387300
rosa_wichuraiana	Rw1G001010 Rw1G001020 Rw5G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1115
AccB1I	GGYRCC	4 cut(s)	626, 935, 1076, 1082
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	2 cut(s)	348, 789
AciI	CCGC	8 cut(s)	105, 272, 312, 673, 711, 787, 789, 1001
AcuI	CTGAAG	1 cut(s)	1124
AfaI	GTAC	2 cut(s)	670, 824
AfiI	CCNNNNNNNGG	3 cut(s)	413, 511, 1072
AjnI	CCWGG	2 cut(s)	369, 732
AluBI	AGCT	8 cut(s)	52, 355, 485, 550, 695, 906, 1138, 1181
AluI	AGCT	8 cut(s)	52, 355, 485, 550, 695, 906, 1138, 1181
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	1 cut(s)	712
AlwNI	CAGNNNCTG	2 cut(s)	314, 1147
AoxI	GGCC	3 cut(s)	116, 513, 730
ApeKI	GCWGC	5 cut(s)	164, 329, 332, 620, 695
Asp700I	GAANNNNTTC	2 cut(s)	154, 551
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	225, 919, 1007
AsuNHI	GCTAGC	1 cut(s)	902
BanI	GGYRCC	4 cut(s)	626, 935, 1076, 1082
BanII	GRGCYC	2 cut(s)	23, 1019
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	5 cut(s)	176, 316, 319, 607, 682
BccI	CCATC	3 cut(s)	262, 569, 761
BciT130I	CCWGG	2 cut(s)	371, 734
BciVI	GTATCC	1 cut(s)	186
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	2 cut(s)	59, 903
BfmI	CTRYAG	1 cut(s)	745
BfuAI	ACCTGC	1 cut(s)	1115
BfuI	GTATCC	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	7 cut(s)	106, 165, 312, 330, 333, 621, 696
BlsI	GCNGC	7 cut(s)	107, 166, 313, 331, 334, 622, 697
Bme1390I	CCNGG	2 cut(s)	371, 734
BmiI	GGNNCC	5 cut(s)	64, 628, 937, 1078, 1084
BmrFI	CCNGG	2 cut(s)	371, 734
BmsI	GCATC	7 cut(s)	369, 617, 676, 770, 822, 873, 956
BmtI	GCTAGC	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	60, 368
BsaJI	CCNNGG	2 cut(s)	787, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 511, 1072
Bse118I	RCCGGY	2 cut(s)	938, 1079
Bse1I	ACTGG	2 cut(s)	587, 880
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	371, 734
BseDI	CCNNGG	2 cut(s)	787, 826
BseGI	GGATG	4 cut(s)	379, 492, 580, 984
BseLI	CCNNNNNNNGG	3 cut(s)	413, 511, 1072
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	587, 880
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	5 cut(s)	176, 316, 319, 607, 682
Bsh1236I	CGCG	2 cut(s)	348, 789
BshFI	GGCC	3 cut(s)	118, 515, 732
BshNI	GGYRCC	4 cut(s)	626, 935, 1076, 1082
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	2 cut(s)	939, 1080
BslFI	GGGAC	2 cut(s)	448, 1048
BslI	CCNNNNNNNGG	3 cut(s)	413, 511, 1072
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	2 cut(s)	448, 1048
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	118, 515, 732
Bsp1286I	GDGCHC	3 cut(s)	23, 870, 1019
Bsp143I	GATC	2 cut(s)	205, 216
BspACI	CCGC	8 cut(s)	105, 272, 312, 673, 711, 787, 789, 1001
BspANI	GGCC	3 cut(s)	118, 515, 732
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	348, 789
BspHI	TCATGA	1 cut(s)	1041
BspLI	GGNNCC	5 cut(s)	64, 628, 937, 1078, 1084
BspMI	ACCTGC	1 cut(s)	1115
BspOI	GCTAGC	1 cut(s)	906
BspT107I	GGYRCC	4 cut(s)	626, 935, 1076, 1082
BsrDI	GCAATG	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	938, 1079
BsrI	ACTGG	2 cut(s)	587, 880
BssAI	RCCGGY	2 cut(s)	938, 1079
BssECI	CCNNGG	2 cut(s)	787, 826
BssMI	GATC	2 cut(s)	205, 216
Bst2UI	CCWGG	2 cut(s)	371, 734
Bst4CI	ACNGT	2 cut(s)	28, 827
Bst6I	CTCTTC	2 cut(s)	637, 1073
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	5 cut(s)	274, 391, 395, 904, 1122
BstDEI	CTNAG	3 cut(s)	510, 604, 699
BstDSI	CCRYGG	2 cut(s)	787, 826
BstENI	CCTNNNNNAGG	1 cut(s)	1070
BstF5I	GGATG	4 cut(s)	379, 492, 580, 984
BstFNI	CGCG	2 cut(s)	348, 789
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	208, 219
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	2 cut(s)	205, 216
BstNI	CCWGG	2 cut(s)	371, 734
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	369, 732
BstSFI	CTRYAG	1 cut(s)	745
BstUI	CGCG	2 cut(s)	348, 789
BstV1I	GCAGC	5 cut(s)	176, 316, 319, 607, 682
BstXI	CCANNNNNNTGG	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	118, 515, 732
BtgI	CCRYGG	2 cut(s)	787, 826
BtsCI	GGATG	4 cut(s)	379, 492, 580, 984
BtsIMutI	CAGTG	2 cut(s)	282, 873
BveI	ACCTGC	1 cut(s)	1115
Cac8I	GCNNGC	5 cut(s)	274, 391, 395, 904, 1122
CaiI	CAGNNNCTG	2 cut(s)	314, 1147
CciI	TCATGA	1 cut(s)	1041
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	938, 1079
Cfr42I	CCGCGG	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	669, 823
CviAII	CATG	3 cut(s)	188, 192, 1042
CviQI	GTAC	2 cut(s)	669, 823
DdeI	CTNAG	3 cut(s)	510, 604, 699
DpnI	GATC	2 cut(s)	207, 218
DpnII	GATC	2 cut(s)	205, 216
Eam1104I	CTCTTC	2 cut(s)	637, 1073
EarI	CTCTTC	2 cut(s)	637, 1073
Eco147I	AGGCCT	2 cut(s)	118, 515
Eco24I	GRGCYC	2 cut(s)	23, 1019
Eco32I	GATATC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	1124
EcoNI	CCTNNNNNAGG	1 cut(s)	1070
EcoRII	CCWGG	2 cut(s)	369, 732
EcoRV	GATATC	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	23, 1019
FaeI	CATG	3 cut(s)	191, 195, 1045
FalI	AAGNNNNNCTT	2 cut(s)	1052, 1084
FaqI	GGGAC	2 cut(s)	448, 1048
FatI	CATG	3 cut(s)	187, 191, 1041
FauI	CCCGC	2 cut(s)	265, 680
FauNDI	CATATG	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	7 cut(s)	106, 165, 312, 330, 333, 621, 696
FokI	GGATG	4 cut(s)	386, 479, 587, 991
FriOI	GRGCYC	2 cut(s)	23, 1019
Fsp4HI	GCNGC	7 cut(s)	106, 165, 312, 330, 333, 621, 696
FspBI	CTAG	2 cut(s)	59, 903
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	7 cut(s)	106, 165, 312, 330, 333, 621, 696
HaeIII	GGCC	3 cut(s)	118, 515, 732
HapII	CCGG	2 cut(s)	939, 1080
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	191, 195, 1045
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	548, 1136
HinfI	GANTC	3 cut(s)	361, 754, 851
HpaII	CCGG	2 cut(s)	939, 1080
HphI	GGTGA	3 cut(s)	225, 919, 1007
Hpy166II	GTNNAC	3 cut(s)	649, 745, 823
Hpy188I	TCNGA	3 cut(s)	259, 403, 766
Hpy188III	TCNNGA	4 cut(s)	77, 112, 544, 1042
Hpy8I	GTNNAC	3 cut(s)	649, 745, 823
HpyAV	CCTTC	2 cut(s)	697, 969
HpyCH4III	ACNGT	2 cut(s)	28, 827
HpyF3I	CTNAG	3 cut(s)	510, 604, 699
Hsp92II	CATG	3 cut(s)	191, 195, 1045
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	216
KspI	CCGCGG	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	205, 216
LmnI	GCTCC	4 cut(s)	197, 340, 873, 1178
Lsp1109I	GCAGC	5 cut(s)	176, 316, 319, 607, 682
LweI	GCATC	7 cut(s)	369, 617, 676, 770, 822, 873, 956
MaeI	CTAG	2 cut(s)	59, 903
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	207, 218
MboI	GATC	2 cut(s)	205, 216
MboII	GAAGA	4 cut(s)	624, 1057, 1060, 1085
MfeI	CAATTG	3 cut(s)	339, 957, 1101
MhlI	GDGCHC	3 cut(s)	23, 870, 1019
MluCI	AATT	6 cut(s)	151, 339, 417, 722, 957, 1101
MlyI	GAGTC	1 cut(s)	748
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	154, 551
MseI	TTAA	2 cut(s)	518, 1183
MslI	CAYNNNNRTG	2 cut(s)	192, 818
MspA1I	CMGCKG	2 cut(s)	314, 789
MspI	CCGG	2 cut(s)	939, 1080
MspR9I	CCNGG	2 cut(s)	371, 734
MunI	CAATTG	3 cut(s)	339, 957, 1101
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	2 cut(s)	371, 734
MvnI	CGCG	2 cut(s)	348, 789
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	2 cut(s)	205, 216
NheI	GCTAGC	1 cut(s)	902
NlaIII	CATG	3 cut(s)	191, 195, 1045
NlaIV	GGNNCC	5 cut(s)	64, 628, 937, 1078, 1084
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	195
PagI	TCATGA	1 cut(s)	1041
PceI	AGGCCT	2 cut(s)	118, 515
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	2 cut(s)	154, 551
PfeI	GAWTC	2 cut(s)	361, 851
PkrI	GCNGC	7 cut(s)	107, 166, 313, 331, 334, 622, 697
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	369, 732
PspGI	CCWGG	2 cut(s)	369, 732
PspN4I	GGNNCC	5 cut(s)	64, 628, 937, 1078, 1084
PstNI	CAGNNNCTG	2 cut(s)	314, 1147
RsaI	GTAC	2 cut(s)	670, 824
RsaNI	GTAC	2 cut(s)	669, 823
RseI	CAYNNNNRTG	2 cut(s)	192, 818
SacII	CCGCGG	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	518, 1183
SatI	GCNGC	7 cut(s)	106, 165, 312, 330, 333, 621, 696
Sau3AI	GATC	2 cut(s)	205, 216
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	371, 734
SduI	GDGCHC	3 cut(s)	23, 870, 1019
SfaNI	GCATC	7 cut(s)	369, 617, 676, 770, 822, 873, 956
SfcI	CTRYAG	1 cut(s)	745
Sfr303I	CCGCGG	1 cut(s)	790
SgrBI	CCGCGG	1 cut(s)	790
SmiMI	CAYNNNNRTG	2 cut(s)	192, 818
SmlI	CTYRAG	2 cut(s)	75, 383
SmoI	CTYRAG	2 cut(s)	75, 383
Sse9I	AATT	6 cut(s)	151, 339, 417, 722, 957, 1101
SseBI	AGGCCT	2 cut(s)	118, 515
SsiI	CCGC	8 cut(s)	105, 272, 312, 673, 711, 787, 789, 1001
SspI	AATATT	1 cut(s)	1090
SspMI	CTAG	2 cut(s)	59, 903
StuI	AGGCCT	2 cut(s)	118, 515
StyD4I	CCNGG	2 cut(s)	369, 732
TaaI	ACNGT	2 cut(s)	28, 827
TaqI	TCGA	1 cut(s)	1023
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	6 cut(s)	151, 339, 417, 722, 957, 1101
TauI	GCSGC	2 cut(s)	108, 314
TfiI	GAWTC	2 cut(s)	361, 851
Tru1I	TTAA	2 cut(s)	518, 1183
Tru9I	TTAA	2 cut(s)	518, 1183
TscAI	CASTG	2 cut(s)	289, 880
TseI	GCWGC	5 cut(s)	164, 329, 332, 620, 695
TspDTI	ATGAA	2 cut(s)	197, 1058
TspGWI	ACGGA	2 cut(s)	485, 959
TspRI	CASTG	2 cut(s)	289, 880
XagI	CCTNNNNNAGG	1 cut(s)	1070
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 98
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	2 cut(s)	154, 551
XspI	CTAG	2 cut(s)	59, 903
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.