Rorug01G0006100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001633
Physical Location & Seq
Reverse (-)
1253831 .. 1362771
108941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0006100.1

Sequence Viewer

Length: 2742 bp
ATGATGATGATGAAGCCTCAGCTGCAAAAACCACTCTCCTCCTCTGCTAGATCTAGTCCTCTCTTACCACCAAAACCCGGCAGCTCCGCCATTCTGGGCAGCCCTTTCTTCCTCAACATCCTTCCTGCACGCGGCCACACAAAGCACTACTTGAGCAAAAAATATAATCGCATCCGTGCCTCCAGTGAAGTAAAGGCAGCGACGGCAACCAACACAGGGGTGGATAAAACAGATACTGCAGTTACAGTAAAGGCAGTGGTTACGGTGCAAGAAACAGCGGCAAACATCCTCTCCACCCTTAGCTTGACTGCACCGCTCGACACCCTCACCGATTTCGCCGGCAAAACCTTTCTTCTCGAGCTCGTCAGCGCTCAACTTGACCCCAAGACTGGGTTGGAGAAGGAAACAATAAAGGGATATGCACACAAAGTGAACCAAAAAGAGACGATCGTCACGTACGAGAGTGTGCTGACGATCCCAGCAGGTTTCGGGGATATCGGAGCGGTTCAGGTTGAGAATGAGCACCACAAGGAGGCTTACATCAAGAGTATCGAGATCACCGGCTTCCCAAATGGCACCTCTGTTAGTGTTCCATGTAATTCATGGACTCATTCCAAGTATGACAATAAGCAGAAGAGAATCTTTTTCACTAACAAGTCTTACTTACCATTAGAGACTCCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGCTACAACTTCTGCGAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAAGGATCTACGATTATGATACATACAATGATCTTGGAGACCCGGATAGCAAAGACGAGTTGGCTAGGCCTGTCCTTGGTGGCAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTATCGGAGGAAAGAAGCAGCAGCGTGTATGTGCCAAGAGATGAAGCGTTTGCAGAGTTGAAACAGCTCACATTCTCTACAAAGACCCTGAAATCTGTGCTGCACGCATTGCTTCCTCAGCTTGAGATAACACTTGTTGATCCAGAGCTAGGATTTCCCTACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAAAAGCTAGTGGCTTTTTTCAGTCAATCATACCAAGGCTAGTCAAGGCAATTAGCGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCAAAGACGAAGAATTTTCTCGGCAAACTCTAGCTGGTCTTAATCCATATAGCATAGAGCTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCAGCTGAATCATTGATCACCACAGAACTGGTGGAGAATGAGATCAGAGGCTTTATGACTGTCAATGAGGCCTTAAAAAGAAAGAAGCTCTTTATTTTGGATTATCATGATCTGCTCATGCCTTATGTGAACAAAGTGAGAGAGGTTGAAGGAACCACACTGTATGGTTCTCGGACACTTTTCTTCCTCAATGAGAATGGCACACTGAGGCCTGTTGCCATTGAACTCACTCGGCCACCCATTGGTGACAAGCCCCAATGGAAGGAAGTGTTTACCCCAACATGGGATGCCACTGGTTGCTGGCTTTGGAGGCTTGCGAAAGCCCATGTTTGTGCCCATGATTCAGGCTATCATCAGCTTGTCATCCACTGGCTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAGCTAATCGACAACTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTCCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAGCCCTCATTAATGCAGGTGGAATAATTGAGACCTGCTTCTCACCAGCAAAGTACTCAATTGAGCTCAGTTCTGCTGCTTATGACCAGCTTTGGCGCTTTGACATGGAAGCTTTGCCTGCAGATCTAATCAGAAGGGGAATGGCAGTTGAGGATCCTACAGCTGAGCATGGTTTGAAGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAGTGGGTGGGTGACTATGTGAACCACTATTATCCAGACCCAACTCTTGTTGAATCTGATAACGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACCGAAGGCCATGCAGATAAAAAAGATGAACCATGGTGGCCTGTTTTGAAAACCCCAGAAGATCTCATTCATACTTTGACAACTATAATTTGGGTTACAGCTGGACATCATGCTGCAGTGAACTTTGGTCAGTACACGTATGCCGGATACTTCCCGAACCGGCCCACAATAGCTCGAAGCAACATGCCAACCGAAGATCCAAACGAGGATCTTTTCAAGATATTTTTGAAGAAACCAGAAGCTGCATTGCTGAGGTGCTTTCCCTCACAGATTCAAGCAACAAAAGTGATGGCTGTCTTGGATGTATTATCGAACCATTCACCCGATGAGGAGTATATTGGTGGGAATGTGGAGTCATCTTGGGCTGAAAACCCAGTGATAAACGCAGCTTTCGAGCGGTTCAACGGCAATTTGAAGAGGCTAGAAGGAATTATCGATGAGAGGAACACCAATATGAAGCTGAAAAACAGAGTCGGAGCAGGGGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAGAACCGGGGGTCACAGGAAAGGGAGTTCCCAACAGCATCTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

913

Amino Acids

102.9

Weight (kDa)

5.91

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 145 - 216 7e-08 PLAT/LH2 domain
Lipoxygenase PF00305 229 - 896 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1853
Acc36I ACCTGC 3 cut(s) 473, 1853, 1889
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 1586
AccBSI CCGCTC 3 cut(s) 316, 503, 2575
AccII CGCG 1 cut(s) 132
AciI CCGC 6 cut(s) 87, 132, 278, 314, 503, 2575
AcoI YGGCCR 3 cut(s) 133, 1307, 1577
AcsI RAATTY 2 cut(s) 1223, 1247
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 5 cut(s) 458, 854, 1735, 1901, 2312
AfeI AGCGCT 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 2313
AleI CACNNNNGTG 1 cut(s) 218
AloI GAACNNNNNNTCC 2 cut(s) 2703, 2735
Alw21I GWGCWC 3 cut(s) 363, 525, 1914
Alw26I GTCTC 6 cut(s) 437, 668, 789, 1190, 1871, 2066
AlwNI CAGNNNCTG 2 cut(s) 236, 2420
Ama87I CYCGRG 3 cut(s) 356, 1331, 1842
Aor51HI AGCGCT 1 cut(s) 370
ApoI RAATTY 2 cut(s) 1223, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 2030, 2062
AseI ATTAAT 1 cut(s) 1857
Asp700I GAANNNNTTC 1 cut(s) 2687
AspA2I CCTAGG 1 cut(s) 857
AspLEI GCGC 3 cut(s) 371, 864, 1944
AspS9I GGNCC 2 cut(s) 1343, 2340
AsuC2I CCSGG 3 cut(s) 78, 800, 2700
AsuHPI GGTGA 8 cut(s) 319, 550, 752, 1354, 1601, 1881, 2108, 2490
AvaI CYCGRG 3 cut(s) 356, 1331, 1842
AvrII CCTAGG 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 1681
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BalI TGGCCA 1 cut(s) 1309
BamHI GGATCC 2 cut(s) 895, 1999
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 2 cut(s) 363, 1914
BarI GAAGNNNNNNTAC 2 cut(s) 696, 728
BbsI GAAGAC 1 cut(s) 2043
Bbv12I GWGCWC 3 cut(s) 363, 525, 1914
BbvCI CCTCAGC 4 cut(s) 18, 1017, 1718, 2429
BccI CCATC 4 cut(s) 1163, 1793, 2051, 2461
BceAI ACGGC 2 cut(s) 219, 2599
BcgI CGANNNNNNTGC 2 cut(s) 2171, 2205
BciVI GTATCC 1 cut(s) 2318
BclI TGATCA 1 cut(s) 1359
BcnI CCSGG 3 cut(s) 78, 800, 2700
BcoDI GTCTC 6 cut(s) 437, 668, 789, 1190, 1871, 2066
BfmI CTRYAG 6 cut(s) 237, 865, 1789, 1965, 2004, 2292
BfoI RGCGCY 3 cut(s) 372, 865, 1945
BfuAI ACCTGC 3 cut(s) 473, 1853, 1889
BfuI GTATCC 1 cut(s) 2318
BglII AGATCT 3 cut(s) 50, 1969, 2239
BlnI CCTAGG 1 cut(s) 857
BlpI GCTNAGC 1 cut(s) 2010
BmcAI AGTACT 1 cut(s) 1901
Bme1390I CCNGG 3 cut(s) 78, 800, 2700
BmeT110I CYCGRG 3 cut(s) 356, 1331, 1842
BmgT120I GGNCC 2 cut(s) 1343, 2340
BmiI GGNNCC 4 cut(s) 577, 897, 1498, 2001
BmrFI CCNGG 3 cut(s) 78, 800, 2700
BmrI ACTGGG 2 cut(s) 399, 2546
BmsI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
BmuI ACTGGG 2 cut(s) 399, 2546
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 2043
BplI GAGNNNNNCTC 2 cut(s) 1836, 1868
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 6 cut(s) 18, 299, 1017, 1107, 1718, 2429
Bpu1102I GCTNAGC 1 cut(s) 2010
BpuEI CTTGAG 2 cut(s) 172, 1043
BpuMI CCSGG 3 cut(s) 78, 800, 2700
Bsa29I ATCGAT 1 cut(s) 2613
BsaAI YACGTR 2 cut(s) 456, 2316
BsaI GGTCTC 4 cut(s) 789, 1190, 1871, 2066
BsaJI CCNNGG 5 cut(s) 832, 857, 1145, 2210, 2699
BsaXI ACNNNNNCTCC 5 cut(s) 275, 305, 2646, 2676, 2717
Bse118I RCCGGY 3 cut(s) 338, 560, 2337
Bse1I ACTGG 7 cut(s) 183, 394, 877, 1377, 1642, 1718, 2552
Bse3DI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BseCI ATCGAT 1 cut(s) 2613
BseDI CCNNGG 5 cut(s) 832, 857, 1145, 2210, 2699
BseGI GGATG 9 cut(s) 117, 171, 285, 1636, 1707, 1780, 1801, 2080, 2485
BseMI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BseMII CTCAG 8 cut(s) 32, 1031, 1541, 1709, 1927, 2001, 2420, 2706
BseNI ACTGG 7 cut(s) 183, 394, 877, 1377, 1642, 1718, 2552
BseRI GAGGAG 4 cut(s) 28, 31, 722, 2522
BseSI GKGCMC 1 cut(s) 1681
BseYI CCCAGC 2 cut(s) 478, 1345
BsgI GTGCAG 3 cut(s) 111, 294, 986
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 575
BshVI ATCGAT 1 cut(s) 2613
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 3 cut(s) 363, 525, 1914
BsiHKCI CYCGRG 3 cut(s) 356, 1331, 1842
BsiSI CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2699
BsiWI CGTACG 1 cut(s) 456
BsmAI GTCTC 6 cut(s) 437, 668, 789, 1190, 1871, 2066
BsmBI CGTCTC 1 cut(s) 437
Bso31I GGTCTC 4 cut(s) 789, 1190, 1871, 2066
BsoBI CYCGRG 3 cut(s) 356, 1331, 1842
Bsp1286I GDGCHC 4 cut(s) 363, 525, 1681, 1914
Bsp1407I TGTACA 1 cut(s) 1733
Bsp1720I GCTNAGC 1 cut(s) 2010
Bsp19I CCATGG 1 cut(s) 2210
BspACI CCGC 6 cut(s) 87, 132, 278, 314, 503, 2575
BspCNI CTCAG 8 cut(s) 31, 1030, 1542, 1710, 1926, 2002, 2421, 2705
BspDI ATCGAT 1 cut(s) 2613
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 1450
BspLI GGNNCC 4 cut(s) 577, 897, 1498, 2001
BspMAI CTGCAG 4 cut(s) 241, 869, 1969, 2296
BspMI ACCTGC 3 cut(s) 473, 1853, 1889
BspT107I GGYRCC 1 cut(s) 575
BspTNI GGTCTC 4 cut(s) 789, 1190, 1871, 2066
BsrBI CCGCTC 3 cut(s) 316, 503, 2575
BsrDI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BsrFI RCCGGY 3 cut(s) 338, 560, 2337
BsrGI TGTACA 1 cut(s) 1733
BsrI ACTGG 7 cut(s) 183, 394, 877, 1377, 1642, 1718, 2552
BssAI RCCGGY 3 cut(s) 338, 560, 2337
BssECI CCNNGG 5 cut(s) 832, 857, 1145, 2210, 2699
BssT1I CCWWGG 4 cut(s) 832, 857, 1145, 2210
Bst4CI ACNGT 4 cut(s) 247, 265, 1405, 1506
Bst6I CTCTTC 3 cut(s) 629, 699, 2588
BstAPI GCANNNNNTGC 1 cut(s) 1009
BstAUI TGTACA 1 cut(s) 1733
BstBAI YACGTR 2 cut(s) 456, 2316
BstC8I GCNNGC 6 cut(s) 130, 340, 1005, 1646, 1659, 1965
BstDSI CCRYGG 1 cut(s) 2210
BstF5I GGATG 9 cut(s) 117, 171, 285, 1636, 1707, 1780, 1801, 2080, 2485
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 3 cut(s) 372, 865, 1945
BstHHI GCGC 3 cut(s) 371, 864, 1944
BstMAI GTCTC 6 cut(s) 437, 668, 789, 1190, 1871, 2066
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 8 cut(s) 22, 203, 1009, 1018, 1654, 1847, 1964, 2683
BstNSI RCATGY 1 cut(s) 2365
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 76, 798, 2698
BstSFI CTRYAG 6 cut(s) 237, 865, 1789, 1965, 2004, 2292
BstSLI GKGCMC 1 cut(s) 1681
BstUI CGCG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 2043
BstX2I RGATCY 8 cut(s) 50, 762, 895, 1969, 1999, 2239, 2374, 2386
BstXI CCANNNNNNTGG 1 cut(s) 1372
BstYI RGATCY 8 cut(s) 50, 762, 895, 1969, 1999, 2239, 2374, 2386
Bsu15I ATCGAT 1 cut(s) 2613
BsuI GTATCC 1 cut(s) 2318
BsuTUI ATCGAT 1 cut(s) 2613
BtgI CCRYGG 1 cut(s) 2210
BtgZI GCGATG 1 cut(s) 1182
BtsCI GGATG 9 cut(s) 117, 171, 285, 1636, 1707, 1780, 1801, 2080, 2485
BtsI GCAGTG 2 cut(s) 261, 2301
BtsIMutI CAGTG 8 cut(s) 190, 261, 1502, 1547, 1635, 1711, 2301, 2559
BveI ACCTGC 3 cut(s) 473, 1853, 1889
Cac8I GCNNGC 6 cut(s) 130, 340, 1005, 1646, 1659, 1965
CaiI CAGNNNCTG 2 cut(s) 236, 2420
CciI TCATGA 1 cut(s) 1450
CfoI GCGC 3 cut(s) 371, 864, 1944
Cfr10I RCCGGY 3 cut(s) 338, 560, 2337
Cfr13I GGNCC 2 cut(s) 1343, 2340
ClaI ATCGAT 1 cut(s) 2613
Csp6I GTAC 5 cut(s) 457, 853, 1734, 1900, 2311
CspCI CAANNNNNGTGG 2 cut(s) 2144, 2179
CviQI GTAC 5 cut(s) 457, 853, 1734, 1900, 2311
DraIII CACNNNGTG 1 cut(s) 430
EaeI YGGCCR 3 cut(s) 133, 1307, 1577
Eam1104I CTCTTC 3 cut(s) 629, 699, 2588
EarI CTCTTC 3 cut(s) 629, 699, 2588
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 2 cut(s) 361, 1912
Eco130I CCWWGG 4 cut(s) 832, 857, 1145, 2210
Eco147I AGGCCT 3 cut(s) 826, 1415, 1555
Eco24I GRGCYC 2 cut(s) 363, 1914
Eco31I GGTCTC 4 cut(s) 789, 1190, 1871, 2066
Eco32I GATATC 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 370
Eco53kI GAGCTC 2 cut(s) 361, 1912
Eco88I CYCGRG 3 cut(s) 356, 1331, 1842
EcoICRI GAGCTC 2 cut(s) 361, 1912
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 4 cut(s) 832, 857, 1145, 2210
EcoT22I ATGCAT 1 cut(s) 1782
EcoT38I GRGCYC 2 cut(s) 363, 1914
ErhI CCWWGG 4 cut(s) 832, 857, 1145, 2210
Esp3I CGTCTC 1 cut(s) 437
FalI AAGNNNNNCTT 8 cut(s) 134, 166, 626, 658, 647, 679, 1418, 1450
FauNDI CATATG 1 cut(s) 2671
FbaI TGATCA 1 cut(s) 1359
FokI GGATG 9 cut(s) 104, 158, 272, 1643, 1694, 1767, 1788, 2087, 2492
FriOI GRGCYC 2 cut(s) 363, 1914
GlaI GCGC 3 cut(s) 370, 863, 1943
GsaI CCCAGC 2 cut(s) 482, 1349
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 3 cut(s) 372, 865, 1945
HapII CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2699
HhaI GCGC 3 cut(s) 371, 864, 1944
Hin6I GCGC 3 cut(s) 369, 862, 1942
HinP1I GCGC 3 cut(s) 369, 862, 1942
HindIII AAGCTT 2 cut(s) 1956, 2157
HpaII CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2699
HphI GGTGA 8 cut(s) 319, 550, 752, 1354, 1601, 1881, 2108, 2490
Hpy166II GTNNAC 8 cut(s) 433, 1322, 1474, 1617, 2107, 2166, 2299, 2313
Hpy188I TCNGA 9 cut(s) 500, 757, 907, 1391, 1518, 1979, 2143, 2654, 2695
Hpy8I GTNNAC 8 cut(s) 433, 1322, 1474, 1617, 2107, 2166, 2299, 2313
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 8 cut(s) 131, 394, 1085, 1487, 1600, 1974, 2177, 2597
HpyCH4III ACNGT 4 cut(s) 247, 265, 1405, 1506
HpyCH4IV ACGT 2 cut(s) 455, 2315
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 203, 1009, 1018, 1654, 1847, 1964, 2683
HpySE526I ACGT 2 cut(s) 455, 2315
HspAI GCGC 3 cut(s) 369, 862, 1942
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 1359
LmnI GCTCC 4 cut(s) 89, 500, 709, 2654
LweI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
MaeII ACGT 2 cut(s) 455, 2315
MaeIII GTNAC 9 cut(s) 241, 259, 451, 1096, 1297, 1589, 2096, 2272, 2704
MbiI CCGCTC 3 cut(s) 316, 503, 2575
MfeI CAATTG 2 cut(s) 1905, 2031
MflI RGATCY 8 cut(s) 50, 762, 895, 1969, 1999, 2239, 2374, 2386
MhlI GDGCHC 4 cut(s) 363, 525, 1681, 1914
MlsI TGGCCA 1 cut(s) 1309
MluNI TGGCCA 1 cut(s) 1309
MlyI GAGTC 6 cut(s) 601, 670, 1104, 1717, 2540, 2658
MmeI TCCRAC 2 cut(s) 375, 2632
Mox20I TGGCCA 1 cut(s) 1309
Mph1103I ATGCAT 1 cut(s) 1782
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 2687
MscI TGGCCA 1 cut(s) 1309
MseI TTAA 4 cut(s) 1275, 1418, 1857, 2082
MslI CAYNNNNRTG 3 cut(s) 218, 1674, 2630
Msp20I TGGCCA 1 cut(s) 1309
MspA1I CMGCKG 5 cut(s) 22, 278, 1349, 2009, 2279
MspI CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2699
MspR9I CCNGG 3 cut(s) 78, 800, 2700
MunI CAATTG 2 cut(s) 1905, 2031
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 8 cut(s) 22, 203, 1009, 1018, 1654, 1847, 1964, 2683
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 3 cut(s) 78, 800, 2700
NcoI CCATGG 1 cut(s) 2210
NdeI CATATG 1 cut(s) 2671
NgoMIV GCCGGC 1 cut(s) 338
NlaIV GGNNCC 4 cut(s) 577, 897, 1498, 2001
NmeAIII GCCGAG 2 cut(s) 1234, 1555
NmuCI GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
NsiI ATGCAT 1 cut(s) 1782
NspI RCATGY 1 cut(s) 2365
OliI CACNNNNGTG 1 cut(s) 218
PaeR7I CTCGAG 2 cut(s) 356, 1842
PagI TCATGA 1 cut(s) 1450
PaqCI CACCTGC 1 cut(s) 1853
PceI AGGCCT 3 cut(s) 826, 1415, 1555
PcsI WCGNNNNNNNCGW 3 cut(s) 452, 456, 2568
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 2687
PfeI GAWTC 6 cut(s) 639, 1076, 1352, 1685, 2138, 2449
Pfl23II CGTACG 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 1586
Ple19I CGATCG 1 cut(s) 450
PleI GAGTC 6 cut(s) 601, 670, 1103, 1717, 2539, 2657
PpsI GAGTC 6 cut(s) 601, 670, 1103, 1717, 2539, 2657
Ppu21I YACGTR 2 cut(s) 456, 2316
PshAI GACNNNNGTC 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 1857
Psp124BI GAGCTC 2 cut(s) 363, 1914
PspFI CCCAGC 2 cut(s) 478, 1345
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 4 cut(s) 577, 897, 1498, 2001
PspPI GGNCC 2 cut(s) 1343, 2340
PstI CTGCAG 4 cut(s) 241, 869, 1969, 2296
PstNI CAGNNNCTG 2 cut(s) 236, 2420
PsuI RGATCY 8 cut(s) 50, 762, 895, 1969, 1999, 2239, 2374, 2386
PvuI CGATCG 1 cut(s) 450
PvuII CAGCTG 4 cut(s) 22, 1349, 2009, 2279
RsaI GTAC 5 cut(s) 458, 854, 1735, 1901, 2312
RsaNI GTAC 5 cut(s) 457, 853, 1734, 1900, 2311
RseI CAYNNNNRTG 3 cut(s) 218, 1674, 2630
SacI GAGCTC 2 cut(s) 363, 1914
SaqAI TTAA 4 cut(s) 1275, 1418, 1857, 2082
Sau96I GGNCC 2 cut(s) 1343, 2340
ScaI AGTACT 1 cut(s) 1901
SchI GAGTC 6 cut(s) 601, 670, 1104, 1717, 2540, 2658
ScrFI CCNGG 3 cut(s) 78, 800, 2700
SduI GDGCHC 4 cut(s) 363, 525, 1681, 1914
SfaNI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
SfcI CTRYAG 6 cut(s) 237, 865, 1789, 1965, 2004, 2292
Sfr274I CTCGAG 2 cut(s) 356, 1842
SlaI CTCGAG 2 cut(s) 356, 1842
SmiMI CAYNNNNRTG 3 cut(s) 218, 1674, 2630
SmlI CTYRAG 4 cut(s) 151, 356, 1022, 1842
SmoI CTYRAG 4 cut(s) 151, 356, 1022, 1842
SseBI AGGCCT 3 cut(s) 826, 1415, 1555
SsiI CCGC 6 cut(s) 87, 132, 278, 314, 503, 2575
SstI GAGCTC 2 cut(s) 363, 1914
StuI AGGCCT 3 cut(s) 826, 1415, 1555
StyD4I CCNGG 3 cut(s) 76, 798, 2698
StyI CCWWGG 4 cut(s) 832, 857, 1145, 2210
TaaI ACNGT 4 cut(s) 247, 265, 1405, 1506
TaiI ACGT 2 cut(s) 458, 2318
TaqI TCGA 9 cut(s) 318, 357, 552, 1762, 1843, 2353, 2489, 2571, 2613
TatI WGTACW 3 cut(s) 1733, 1899, 2310
TauI GCSGC 2 cut(s) 135, 281
TfiI GAWTC 6 cut(s) 639, 1076, 1352, 1685, 2138, 2449
Tru1I TTAA 4 cut(s) 1275, 1418, 1857, 2082
Tru9I TTAA 4 cut(s) 1275, 1418, 1857, 2082
TscAI CASTG 8 cut(s) 190, 261, 1509, 1554, 1642, 1718, 2301, 2559
TseFI GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
Tsp45I GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
TspDTI ATGAA 8 cut(s) 26, 591, 957, 1068, 1104, 2220, 2237, 2648
TspGWI ACGGA 3 cut(s) 164, 1316, 1802
TspRI CASTG 8 cut(s) 190, 261, 1509, 1554, 1642, 1718, 2301, 2559
Van91I CCANNNNNTGG 1 cut(s) 1586
VspI ATTAAT 1 cut(s) 1857
XapI RAATTY 2 cut(s) 1223, 1247
XceI RCATGY 1 cut(s) 2365
XcmI CCANNNNNNNNNTGG 4 cut(s) 217, 391, 600, 1372
XhoI CTCGAG 2 cut(s) 356, 1842
XmaJI CCTAGG 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 2687
ZrmI AGTACT 1 cut(s) 1901
Zsp2I ATGCAT 1 cut(s) 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.