AT5G13490

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001633
Physical Location & Seq
Forward (+)
4335272 .. 4337730
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13490.2

Sequence Viewer

Length: 1158 bp
ATGGTTGAACAGACTCAGCACCCCACGATTCTTCAGAAGGTTTCTGGCCAACTCTTGAGCTCGAGTGTTTCTCAGGACATTCGTGGTTATGCTTCGGCTTCCAAAAGGCCTGCTACATACCAGAAACATGCAGCTTACGGAAACTACTCCAATGCTGCATTTCAATATCCTCTTGTGGCTGCATCTCAGATTGCAACTACTACTTCTCCTGTGTTTGTCCAAGCTCCAGGAGAGAAGGGATTTACTAACTTTGCTATTGATTTCATGATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAGCTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGGCTTACTGAGCCATACAAGGGTATTCGTGACTGTTTCGGCAGGACAATTAGGGATGAAGGTATTGGTTCGTTGTGGAGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTCAAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGTGCCTCTTCCCTTCTCTTTGTGTACTCTCTTGACTATGCACGTACCCGTCTTGCCAATGACTCCAAGTCTGCCAAGAAGGGAGGAGGTGAAAGGCAGTTCAATGGTCTTGTTGATGTCTACAAGAAGACCCTCAAGTCAGATGGTATTGCTGGACTTTACCGTGGTTTCAACATCTCGTGTGCTGGTATCATTGTCTACCGTGGTCTCTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTCACTGGAGACCTGCAGGACAGTTTCTTCGCTAGTTTTGCTCTTGGATGGCTCATCACCAATGGTGCGGGTCTTGCGTCGTACCCGATTGACACGGTTAGAAGAAGAATGATGATGACATCAGGTGAAGCGGTGAAGTACAAGAGCTCATTTGATGCGTTCTCACAGATCGTGAAGAAGGAAGGAGCCAAGTCTCTGTTCAAGGGTGCGGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTACGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

385

Amino Acids

41.75

Weight (kDa)

9.79

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 83 - 179 7.3e-26 Mitochondrial carrier protein
Mito_carr PF00153 187 - 282 2.5e-21 Mitochondrial carrier protein
Mito_carr PF00153 288 - 376 1.5e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1070
AasI GACNNNNNNGTC 1 cut(s) 733
Acc36I ACCTGC 2 cut(s) 864, 1070
AccB1I GGYRCC 3 cut(s) 599, 1055, 1151
AccI GTMKAC 2 cut(s) 717, 795
AciI CCGC 4 cut(s) 456, 911, 974, 1052
AclWI GGATC 1 cut(s) 1150
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 5 cut(s) 623, 643, 821, 926, 983
AfiI CCNNNNNNNGG 2 cut(s) 386, 484
AflII CTTAAG 1 cut(s) 356
AhdI GACNNNNNGTC 1 cut(s) 664
AjnI CCWGG 2 cut(s) 226, 342
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AluBI AGCT 6 cut(s) 60, 134, 224, 328, 990, 1111
AluI AGCT 6 cut(s) 60, 134, 224, 328, 990, 1111
Alw21I GWGCWC 2 cut(s) 62, 992
Alw26I GTCTC 3 cut(s) 809, 846, 1041
AlwI GGATC 1 cut(s) 1150
AlwNI CAGNNNCTG 1 cut(s) 1085
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 3 cut(s) 46, 107, 486
ApeKI GCWGC 8 cut(s) 131, 155, 179, 284, 302, 305, 593, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AsuHPI GGTGA 4 cut(s) 698, 892, 980, 988
AvaI CYCGRG 1 cut(s) 61
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 3 cut(s) 599, 1055, 1151
BanII GRGCYC 2 cut(s) 62, 992
BauI CACGAG 1 cut(s) 775
BbsI GAAGAC 2 cut(s) 731, 1117
Bbv12I GWGCWC 2 cut(s) 62, 992
BbvI GCAGC 8 cut(s) 142, 143, 166, 271, 289, 292, 580, 1098
BccI CCATC 4 cut(s) 262, 542, 734, 885
BceAI ACGGC 1 cut(s) 1058
BciT130I CCWGG 2 cut(s) 228, 344
BcoDI GTCTC 3 cut(s) 809, 846, 1041
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 2 cut(s) 857, 1112
BfrI CTTAAG 1 cut(s) 356
BfuAI ACCTGC 2 cut(s) 864, 1070
BisI GCNGC 8 cut(s) 132, 156, 180, 285, 303, 306, 594, 1112
BlsI GCNGC 8 cut(s) 133, 157, 181, 286, 304, 307, 595, 1113
Bme1390I CCNGG 2 cut(s) 228, 344
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 61
BmiI GGNNCC 4 cut(s) 601, 1030, 1057, 1153
BmrFI CCNGG 2 cut(s) 228, 344
BmsI GCATC 4 cut(s) 191, 342, 590, 988
BpiI GAAGAC 2 cut(s) 731, 1117
BplI GAGNNNNNCTC 2 cut(s) 55, 87
BpmI CTGGAG 3 cut(s) 210, 606, 870
BpuEI CTTGAG 2 cut(s) 76, 716
BsaAI YACGTR 1 cut(s) 641
BsaI GGTCTC 2 cut(s) 809, 846
BsaJI CCNNGG 2 cut(s) 760, 799
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 484
Bse1I ACTGG 2 cut(s) 560, 853
BseBI CCWGG 2 cut(s) 228, 344
BseDI CCNNGG 2 cut(s) 760, 799
BseGI GGATG 5 cut(s) 352, 427, 553, 896, 1062
BseLI CCNNNNNNNGG 2 cut(s) 386, 484
BseMII CTCAG 5 cut(s) 29, 86, 200, 366, 497
BseNI ACTGG 2 cut(s) 560, 853
BseRI GAGGAG 2 cut(s) 696, 833
BseXI GCAGC 8 cut(s) 142, 143, 166, 271, 289, 292, 580, 1098
BshFI GGCC 3 cut(s) 48, 109, 488
BshNI GGYRCC 3 cut(s) 599, 1055, 1151
BsiHKAI GWGCWC 2 cut(s) 62, 992
BsiHKCI CYCGRG 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 386, 484
BsmAI GTCTC 3 cut(s) 809, 846, 1041
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 3 cut(s) 48, 109, 488
Bso31I GGTCTC 2 cut(s) 809, 846
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 62, 992
Bsp143I GATC 2 cut(s) 1011, 1142
BspACI CCGC 4 cut(s) 456, 911, 974, 1052
BspANI GGCC 3 cut(s) 48, 109, 488
BspCNI CTCAG 5 cut(s) 28, 85, 199, 367, 496
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 601, 1030, 1057, 1153
BspMAI CTGCAG 2 cut(s) 861, 1116
BspMI ACCTGC 2 cut(s) 864, 1070
BspPI GGATC 1 cut(s) 1150
BspT107I GGYRCC 3 cut(s) 599, 1055, 1151
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 2 cut(s) 809, 846
BsrI ACTGG 2 cut(s) 560, 853
BssECI CCNNGG 2 cut(s) 760, 799
BssMI GATC 2 cut(s) 1011, 1142
BssSI CACGAG 1 cut(s) 775
Bst2BI CACGAG 1 cut(s) 775
Bst2UI CCWGG 2 cut(s) 228, 344
Bst4CI ACNGT 6 cut(s) 401, 761, 800, 819, 866, 940
Bst6I CTCTTC 1 cut(s) 610
BstAFI CTTAAG 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 111, 1071, 1095, 1099
BstDEI CTNAG 5 cut(s) 15, 72, 186, 375, 483
BstDSI CCRYGG 2 cut(s) 760, 799
BstF5I GGATG 5 cut(s) 352, 427, 553, 896, 1062
BstKTI GATC 2 cut(s) 1014, 1145
BstMAI GTCTC 3 cut(s) 809, 846, 1041
BstMBI GATC 2 cut(s) 1011, 1142
BstMWI GCNNNNNNNGC 5 cut(s) 325, 376, 599, 881, 917
BstNI CCWGG 2 cut(s) 228, 344
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 226, 342
BstSFI CTRYAG 2 cut(s) 857, 1112
BstV1I GCAGC 8 cut(s) 142, 143, 166, 271, 289, 292, 580, 1098
BstV2I GAAGAC 2 cut(s) 731, 1117
BstX2I RGATCY 1 cut(s) 1142
BstYI RGATCY 1 cut(s) 1142
BsuRI GGCC 3 cut(s) 48, 109, 488
BtgI CCRYGG 2 cut(s) 760, 799
BtsCI GGATG 5 cut(s) 352, 427, 553, 896, 1062
BtsIMutI CAGTG 1 cut(s) 846
BveI ACCTGC 2 cut(s) 864, 1070
Cac8I GCNNGC 4 cut(s) 111, 1071, 1095, 1099
CaiI CAGNNNCTG 1 cut(s) 1085
CciI TCATGA 1 cut(s) 264
CseI GACGC 1 cut(s) 909
Csp6I GTAC 5 cut(s) 622, 642, 820, 925, 982
CviAII CATG 2 cut(s) 128, 265
CviQI GTAC 5 cut(s) 622, 642, 820, 925, 982
DdeI CTNAG 5 cut(s) 15, 72, 186, 375, 483
DpnI GATC 2 cut(s) 1013, 1144
DpnII GATC 2 cut(s) 1011, 1142
DrdI GACNNNNNNGTC 1 cut(s) 733
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 733
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 610
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 610
Ecl136II GAGCTC 2 cut(s) 60, 990
Eco147I AGGCCT 2 cut(s) 109, 488
Eco24I GRGCYC 2 cut(s) 62, 992
Eco31I GGTCTC 2 cut(s) 809, 846
Eco53kI GAGCTC 2 cut(s) 60, 990
Eco57I CTGAAG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 61
EcoICRI GAGCTC 2 cut(s) 60, 990
EcoRII CCWGG 2 cut(s) 226, 342
EcoT38I GRGCYC 2 cut(s) 62, 992
FaeI CATG 2 cut(s) 131, 268
FaiI YATR 7 cut(s) 90, 118, 129, 266, 382, 636, 1140
FatI CATG 2 cut(s) 127, 264
FauI CCCGC 2 cut(s) 904, 1045
FblI GTMKAC 2 cut(s) 717, 795
Fnu4HI GCNGC 8 cut(s) 132, 156, 180, 285, 303, 306, 594, 1112
FokI GGATG 5 cut(s) 359, 434, 560, 903, 1049
FriOI GRGCYC 2 cut(s) 62, 992
Fsp4HI GCNGC 8 cut(s) 132, 156, 180, 285, 303, 306, 594, 1112
FspBI CTAG 1 cut(s) 876
GluI GCNGC 8 cut(s) 132, 156, 180, 285, 303, 306, 594, 1112
GsuI CTGGAG 3 cut(s) 210, 606, 870
HaeIII GGCC 3 cut(s) 48, 109, 488
HgaI GACGC 1 cut(s) 909
Hin1II CATG 2 cut(s) 131, 268
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 5 cut(s) 13, 28, 334, 659, 824
HphI GGTGA 4 cut(s) 698, 892, 980, 988
Hpy166II GTNNAC 3 cut(s) 622, 718, 796
Hpy188I TCNGA 3 cut(s) 36, 189, 739
Hpy8I GTNNAC 3 cut(s) 622, 718, 796
Hpy99I CGWCG 1 cut(s) 925
HpyAV CCTTC 8 cut(s) 31, 229, 360, 419, 620, 670, 1015, 1019
HpyCH4III ACNGT 6 cut(s) 401, 761, 800, 819, 866, 940
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 9 cut(s) 131, 158, 182, 194, 500, 638, 859, 1079, 1114
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 376, 599, 881, 917
HpyF3I CTNAG 5 cut(s) 15, 72, 186, 375, 483
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 2 cut(s) 131, 268
Kzo9I GATC 2 cut(s) 1011, 1142
LmnI GCTCC 3 cut(s) 229, 313, 1028
Lsp1109I GCAGC 8 cut(s) 142, 143, 166, 271, 289, 292, 580, 1098
LweI GCATC 4 cut(s) 191, 342, 590, 988
MaeI CTAG 1 cut(s) 876
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 3 cut(s) 395, 470, 572
MalI GATC 2 cut(s) 1013, 1144
MboI GATC 2 cut(s) 1011, 1142
MboII GAAGA 8 cut(s) 23, 597, 736, 862, 957, 960, 1030, 1117
MflI RGATCY 1 cut(s) 1142
MhlI GDGCHC 2 cut(s) 62, 992
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 1 cut(s) 414
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 3 cut(s) 7, 653, 818
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 357, 1118
Msp20I TGGCCA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 228, 344
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 2 cut(s) 228, 344
MwoI GCNNNNNNNGC 5 cut(s) 325, 376, 599, 881, 917
NdeII GATC 2 cut(s) 1011, 1142
NlaIII CATG 2 cut(s) 131, 268
NlaIV GGNNCC 4 cut(s) 601, 1030, 1057, 1153
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 61
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 1070
PceI AGGCCT 2 cut(s) 109, 488
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 28, 334
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 8 cut(s) 133, 157, 181, 286, 304, 307, 595, 1113
PleI GAGTC 3 cut(s) 7, 653, 818
PpsI GAGTC 3 cut(s) 7, 653, 818
Ppu21I YACGTR 1 cut(s) 641
Psp124BI GAGCTC 2 cut(s) 62, 992
Psp6I CCWGG 2 cut(s) 226, 342
PspGI CCWGG 2 cut(s) 226, 342
PspN4I GGNNCC 4 cut(s) 601, 1030, 1057, 1153
PspXI VCTCGAGB 1 cut(s) 61
PstI CTGCAG 2 cut(s) 861, 1116
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 1 cut(s) 1142
RsaI GTAC 5 cut(s) 623, 643, 821, 926, 983
RsaNI GTAC 5 cut(s) 622, 642, 820, 925, 982
SacI GAGCTC 2 cut(s) 62, 992
SaqAI TTAA 2 cut(s) 357, 1118
SatI GCNGC 8 cut(s) 132, 156, 180, 285, 303, 306, 594, 1112
Sau3AI GATC 2 cut(s) 1011, 1142
SbfI CCTGCAGG 1 cut(s) 861
SchI GAGTC 3 cut(s) 7, 653, 818
ScrFI CCNGG 2 cut(s) 228, 344
SdaI CCTGCAGG 1 cut(s) 861
SduI GDGCHC 2 cut(s) 62, 992
SfaNI GCATC 4 cut(s) 191, 342, 590, 988
SfcI CTRYAG 2 cut(s) 857, 1112
Sfr274I CTCGAG 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 61
SmlI CTYRAG 4 cut(s) 55, 61, 356, 731
SmoI CTYRAG 4 cut(s) 55, 61, 356, 731
Sse8387I CCTGCAGG 1 cut(s) 861
Sse9I AATT 1 cut(s) 414
SseBI AGGCCT 2 cut(s) 109, 488
SsiI CCGC 4 cut(s) 456, 911, 974, 1052
SspMI CTAG 1 cut(s) 876
SstI GAGCTC 2 cut(s) 62, 992
StuI AGGCCT 2 cut(s) 109, 488
StyD4I CCNGG 2 cut(s) 226, 342
TaaI ACNGT 6 cut(s) 401, 761, 800, 819, 866, 940
TaiI ACGT 1 cut(s) 643
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 414
TatI WGTACW 2 cut(s) 621, 981
TfiI GAWTC 2 cut(s) 28, 334
Tru1I TTAA 2 cut(s) 357, 1118
Tru9I TTAA 2 cut(s) 357, 1118
TscAI CASTG 1 cut(s) 853
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 8 cut(s) 131, 155, 179, 284, 302, 305, 593, 1111
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 253, 438
TspGWI ACGGA 2 cut(s) 153, 458
TspRI CASTG 1 cut(s) 853
Vha464I CTTAAG 1 cut(s) 356
XceI RCATGY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 717, 795
XspI CTAG 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.