FvH4_7g00912

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001633
Physical Location & Seq
Forward (+)
1375729 .. 1379441
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00912.t1

Sequence Viewer

Length: 1197 bp
ATGGTTGATCAGGTTCAACACCCTACTGTCATGCAAAAGGTTGCTGGCCAGCTCTTTCAGCAATCCATTCAGAGTTATGATACTGGCTTCCAGAGACAAGGGATGTACCAGAGACGTCCTGCATATGGGAATTACTCCAACGCTGCATTGCAGTACCCTGTGATGCCAGCTTGCAGGGCTACCGCTGATCTATCAATGATCCCATCAACTGCATCTCCAGTTTTTGTGCAAGCCCCCGCAGAGAAAAGCCACTTTGTCATTGATTTCCTTATGGGAGGTGTGTCTGCTGCTGTCTCTAAGACTGCTGCTGCTCCCATTGAGCGTGTGAAGCTTTTGATTCAGAACCAGGATGAAATGATCAAGGCCGGTCGTTTGTCTGAACCCTACAAGGGCATTGGTGAGTGCTTCTCCCGAACAATCAAGGAAGAAGGATTTGGTTCGTTGTGGAGAGGAAACACTGCCAACGTCATCCGTTACTTCCCCACCCAGGCCTTGAATTTTGCATTCAAGGATTACTTCAAGAGGTTATTCAATTTCAAGAAAGACAGGGATGGTTATTGGAAGTGGTTTGCTGGTAACTTGGCCTCAGGAGGTGCAGCTGGTGCTTCTTCTCTTTTCTTTGTCTACTCTTTGGACTATGCTCGTACTCGTTTGGCTAATGATTCTAAGGCTGCAAAGAAGGGAGGAGAAAGACAATTCAATGGTCTGGTTGATGTCTACAAGAAGACATTGAAATCTGATGGTATTGCTGGTCTATACCGTGGATTCAACATATCTTGTGTCGGTATCATTGTTTACCGTGGTCTGTACTTTGGACTGTACGATTCACTCAAGCCTGTGGTTCTAACTGGAGGTTTGCAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGATGGGTCATCACAAATGGTGCTGGTCTTGCATCCTACCCAATTGACACTGTCCGGAGAAGAATGATGATGACCTCTGGTGAGGCCGTCAAGTACAAGAGTTCATTTGATGCCTTCACTCAGATCTTGAAGAACGAGGGTGCCAAATCCCTGTTCAAGGGTGCTGGTGCAAACATCCTTCGTGCCATTGCCGGTGCTGGTGTCCTTTCTGGTTATGACAAGTTGCAGCTGATTGTGTTCGGAAAGAAGTATGGGAGCCAACTGTACTTCTGGTCAGTCTCTCTAGAAGAGTTGCTTTGCATAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

399

Amino Acids

43.82

Weight (kDa)

9.6

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 82 - 180 2.6e-26 Mitochondrial carrier protein
Mito_carr PF00153 188 - 281 6.3e-21 Mitochondrial carrier protein
Mito_carr PF00153 288 - 376 2.1e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 1028
AccI GTMKAC 2 cut(s) 624, 717
AccIII TCCGGA 1 cut(s) 942
AciI CCGC 2 cut(s) 183, 237
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 7 cut(s) 107, 155, 646, 809, 821, 983, 1154
AfiI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
AjnI CCWGG 2 cut(s) 345, 486
AjuI GAANNNNNNNTTGG 4 cut(s) 417, 449, 1025, 1057
AluBI AGCT 6 cut(s) 52, 170, 331, 599, 879, 1117
AluI AGCT 6 cut(s) 52, 170, 331, 599, 879, 1117
Alw26I GTCTC 4 cut(s) 88, 106, 298, 1171
AlwI GGATC 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 942
AoxI GGCC 5 cut(s) 46, 363, 489, 582, 972
ApeKI GCWGC 7 cut(s) 143, 287, 305, 308, 596, 671, 1114
ApoI RAATTY 1 cut(s) 496
AsuHPI GGTGA 2 cut(s) 410, 980
AsuNHI GCTAGC 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 586
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 7 cut(s) 130, 274, 292, 295, 608, 658, 1126
BccI CCATC 4 cut(s) 211, 545, 734, 885
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 2 cut(s) 347, 488
BclI TGATCA 2 cut(s) 7, 357
BcoDI GTCTC 4 cut(s) 88, 106, 298, 1171
BfaI CTAG 2 cut(s) 876, 1172
BglII AGATCT 1 cut(s) 1011
BisI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 672, 1115
BlsI GCNGC 7 cut(s) 145, 289, 307, 310, 598, 673, 1116
Bme1390I CCNGG 2 cut(s) 347, 488
BmiI GGNNCC 2 cut(s) 1030, 1145
BmrFI CCNGG 2 cut(s) 347, 488
BmsI GCATC 4 cut(s) 153, 221, 929, 988
BmtI GCTAGC 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 731
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 2 cut(s) 201, 870
BpuEI CTTGAG 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 486, 760, 799
BsaWI WCCGGW 1 cut(s) 942
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
Bse118I RCCGGY 2 cut(s) 365, 1079
Bse1I ACTGG 3 cut(s) 88, 218, 853
Bse21I CCTNAGG 1 cut(s) 586
Bse3DI GCAATG 2 cut(s) 146, 1074
BseAI TCCGGA 1 cut(s) 942
BseBI CCWGG 2 cut(s) 347, 488
BseDI CCNNGG 3 cut(s) 486, 760, 799
BseGI GGATG 7 cut(s) 108, 355, 468, 556, 896, 920, 1062
BseLI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
BseMI GCAATG 2 cut(s) 146, 1074
BseMII CTCAG 2 cut(s) 600, 1022
BseNI ACTGG 3 cut(s) 88, 218, 853
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 7 cut(s) 130, 274, 292, 295, 608, 658, 1126
BsgI GTGCAG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 5 cut(s) 48, 365, 491, 584, 974
BshNI GGYRCC 1 cut(s) 1028
BsiEI CGRYCG 1 cut(s) 370
BsiSI CCGG 3 cut(s) 366, 943, 1080
BslI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
BsmAI GTCTC 4 cut(s) 88, 106, 298, 1171
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 5 cut(s) 48, 365, 491, 584, 974
Bsp13I TCCGGA 1 cut(s) 942
Bsp143I GATC 5 cut(s) 7, 187, 198, 357, 1011
BspACI CCGC 2 cut(s) 183, 237
BspANI GGCC 5 cut(s) 48, 365, 491, 584, 974
BspCNI CTCAG 2 cut(s) 599, 1021
BspEI TCCGGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 1030, 1145
BspOI GCTAGC 1 cut(s) 879
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 1028
BsrDI GCAATG 2 cut(s) 146, 1074
BsrFI RCCGGY 2 cut(s) 365, 1079
BsrI ACTGG 3 cut(s) 88, 218, 853
BssAI RCCGGY 2 cut(s) 365, 1079
BssECI CCNNGG 3 cut(s) 486, 760, 799
BssMI GATC 5 cut(s) 7, 187, 198, 357, 1011
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 347, 488
Bst4CI ACNGT 6 cut(s) 28, 761, 800, 819, 940, 1152
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 6 cut(s) 46, 50, 168, 172, 231, 877
BstDEI CTNAG 4 cut(s) 297, 586, 666, 1008
BstDSI CCRYGG 2 cut(s) 760, 799
BstENI CCTNNNNNAGG 1 cut(s) 1043
BstF5I GGATG 7 cut(s) 108, 355, 468, 556, 896, 920, 1062
BstKTI GATC 5 cut(s) 10, 190, 201, 360, 1014
BstMAI GTCTC 4 cut(s) 88, 106, 298, 1171
BstMBI GATC 5 cut(s) 7, 187, 198, 357, 1011
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 6 cut(s) 58, 176, 328, 602, 881, 917
BstNI CCWGG 2 cut(s) 347, 488
BstSCI CCNGG 2 cut(s) 345, 486
BstV1I GCAGC 7 cut(s) 130, 274, 292, 295, 608, 658, 1126
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 1011
BstYI RGATCY 1 cut(s) 1011
Bsu36I CCTNAGG 1 cut(s) 586
BsuRI GGCC 5 cut(s) 48, 365, 491, 584, 974
BtgI CCRYGG 2 cut(s) 760, 799
BtsCI GGATG 7 cut(s) 108, 355, 468, 556, 896, 920, 1062
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 456, 936
Cac8I GCNNGC 6 cut(s) 46, 50, 168, 172, 231, 877
Cfr10I RCCGGY 2 cut(s) 365, 1079
Csp6I GTAC 7 cut(s) 106, 154, 645, 808, 820, 982, 1153
CviAII CATG 1 cut(s) 31
CviQI GTAC 7 cut(s) 106, 154, 645, 808, 820, 982, 1153
DdeI CTNAG 4 cut(s) 297, 586, 666, 1008
DpnI GATC 5 cut(s) 9, 189, 200, 359, 1013
DpnII GATC 5 cut(s) 7, 187, 198, 357, 1011
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
Eco147I AGGCCT 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 1043
EcoRII CCWGG 2 cut(s) 345, 486
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 1 cut(s) 34
FalI AAGNNNNNCTT 3 cut(s) 500, 532, 1167
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 244
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 2 cut(s) 7, 357
FblI GTMKAC 2 cut(s) 624, 717
Fnu4HI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 672, 1115
FokI GGATG 7 cut(s) 115, 362, 455, 563, 903, 907, 1049
Fsp4HI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 672, 1115
FspBI CTAG 2 cut(s) 876, 1172
GluI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 672, 1115
GsuI CTGGAG 2 cut(s) 201, 870
HaeIII GGCC 5 cut(s) 48, 365, 491, 584, 974
HapII CCGG 3 cut(s) 366, 943, 1080
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 4 cut(s) 337, 662, 765, 824
HpaII CCGG 3 cut(s) 366, 943, 1080
HphI GGTGA 2 cut(s) 410, 980
Hpy166II GTNNAC 3 cut(s) 625, 718, 796
Hpy188I TCNGA 6 cut(s) 72, 342, 379, 739, 1011, 1130
Hpy188III TCNNGA 8 cut(s) 91, 411, 520, 538, 588, 943, 1015, 1172
Hpy8I GTNNAC 3 cut(s) 625, 718, 796
HpyAV CCTTC 4 cut(s) 422, 673, 1012, 1076
HpyCH4III ACNGT 6 cut(s) 28, 761, 800, 819, 940, 1152
HpyCH4IV ACGT 2 cut(s) 115, 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 176, 328, 602, 881, 917
HpyF3I CTNAG 4 cut(s) 297, 586, 666, 1008
HpySE526I ACGT 2 cut(s) 115, 465
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 942
Ksp22I TGATCA 2 cut(s) 7, 357
Kzo9I GATC 5 cut(s) 7, 187, 198, 357, 1011
LmnI GCTCC 2 cut(s) 316, 1143
Lsp1109I GCAGC 7 cut(s) 130, 274, 292, 295, 608, 658, 1126
LweI GCATC 4 cut(s) 153, 221, 929, 988
MaeI CTAG 2 cut(s) 876, 1172
MaeII ACGT 2 cut(s) 115, 465
MaeIII GTNAC 2 cut(s) 473, 575
MalI GATC 5 cut(s) 9, 189, 200, 359, 1013
MboI GATC 5 cut(s) 7, 187, 198, 357, 1011
MboII GAAGA 6 cut(s) 437, 600, 736, 960, 1030, 1187
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 1011
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 130, 496, 532, 695, 930
MluNI TGGCCA 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 48
MroI TCCGGA 1 cut(s) 942
MscI TGGCCA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 3 cut(s) 185, 599, 1117
MspI CCGG 3 cut(s) 366, 943, 1080
MspR9I CCNGG 2 cut(s) 347, 488
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 2 cut(s) 347, 488
MwoI GCNNNNNNNGC 6 cut(s) 58, 176, 328, 602, 881, 917
NdeI CATATG 1 cut(s) 124
NdeII GATC 5 cut(s) 7, 187, 198, 357, 1011
NheI GCTAGC 1 cut(s) 875
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 1030, 1145
PceI AGGCCT 1 cut(s) 491
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 337, 662, 765, 824
PflFI GACNNNGTC 1 cut(s) 938
PkrI GCNGC 7 cut(s) 145, 289, 307, 310, 598, 673, 1116
Psp6I CCWGG 2 cut(s) 345, 486
PspGI CCWGG 2 cut(s) 345, 486
PspN4I GGNNCC 2 cut(s) 1030, 1145
PsuI RGATCY 1 cut(s) 1011
PsyI GACNNNGTC 1 cut(s) 938
PvuII CAGCTG 2 cut(s) 599, 1117
RsaI GTAC 7 cut(s) 107, 155, 646, 809, 821, 983, 1154
RsaNI GTAC 7 cut(s) 106, 154, 645, 808, 820, 982, 1153
SatI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 672, 1115
Sau3AI GATC 5 cut(s) 7, 187, 198, 357, 1011
ScrFI CCNGG 2 cut(s) 347, 488
SfaNI GCATC 4 cut(s) 153, 221, 929, 988
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 5 cut(s) 130, 496, 532, 695, 930
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 2 cut(s) 183, 237
SspMI CTAG 2 cut(s) 876, 1172
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 345, 486
TaaI ACNGT 6 cut(s) 28, 761, 800, 819, 940, 1152
TaiI ACGT 2 cut(s) 118, 468
TasI AATT 5 cut(s) 130, 496, 532, 695, 930
TatI WGTACW 3 cut(s) 807, 981, 1152
TfiI GAWTC 4 cut(s) 337, 662, 765, 824
TscAI CASTG 2 cut(s) 463, 943
TseI GCWGC 7 cut(s) 143, 287, 305, 308, 596, 671, 1114
TspDTI ATGAA 2 cut(s) 366, 981
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 463, 943
Tth111I GACNNNGTC 1 cut(s) 938
XagI CCTNNNNNAGG 1 cut(s) 1043
XapI RAATTY 1 cut(s) 496
XbaI TCTAGA 1 cut(s) 1171
XmiI GTMKAC 2 cut(s) 624, 717
XspI CTAG 2 cut(s) 876, 1172
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.