Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001633

Physical Location & Seq

Genomic Coordinates Reverse (-)

31726662 .. 31727069

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGAAACTGTTTCACTCATAAAGAAAAAGCTTCAGATCGGTGGATCCGGGAGGAGGAGGAAGAAAACAAACACCCAGATCAGTGCACTGATGCTCCGGCTGACAGAATCAGCGGTGATCTTTCAGATCGGTGGAGTGAGGAGGAAGAAAACAAGCATGAGAAGAGAAACAGTACTGGTTCATCCGACAGAATCAGTGATCTCCCAGATGATATGTTGCGTCTCATACTCTCATTCTTGCCTTTCAAATACGTTGGGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAAATTTTTACTGTTAATGAAGCTGAGCAAGCATCATCAACACAGTATTGGCACGCGATCGTCACAACGAAAACTATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

135

Amino Acids

15.84

Weight (kDa)

4.97

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	65 - 104	1.6e-10	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08580 AT3G08580 AT5G13490 AT5G13490
fragaria_vesca	FvH4_3g29080 FvH4_3g29080 FvH4_3g29080 FvH4_7g00912 FvH4_7g00912 FvH4_7g00920
malus_domestica	MD00G1204500.v1.1 MD03G1178500.v1.1 MD07G1008900.v1.1 MD07G1009000.v1.1 MD07G1009200.v1.1 MD11G1198100.v1.1
prunus_persica	Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.4G244400_v2.0.a1 Prupe.4G244400_v2.0.a1
pyrus_communis	pycom03g13500 pycom07g00770
rosa_chinensis	RchiOBHm_Chr1g0315841 RchiOBHm_Chr1g0315851 RchiOBHm_Chr5g0051451
rosa_laevigata	RLG00000030729 RLG00000034875
rosa_multiflora	Rmu_co8322969.1_g000001 Rmu_sc0022189.1_g000005 Rmu_sc0023933.1_g000005 Rmu_ssc0000154.1_g000011 Rmu_ssc0000154.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027060 Rroxscaffold_4G00331380 Rroxscaffold_4G00331400
rosa_rugosa	Rorug01G0006100 Rorug01G0006100 Rorug01G0006200 Rorug05G0279300 Rorug05G0279400 Rorug05G0279500 Rorug05G0279600
rosa_samantha	Rh1AG017100 Rh1AG017200 Rh5CG387300
rosa_wichuraiana	Rw1G001010 Rw1G001020 Rw5G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	380
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	40, 53
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	263
AluBI	AGCT	2 cut(s)	32, 347
AluI	AGCT	2 cut(s)	32, 347
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	40, 53
ApaLI	GTGCAC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	327
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	89
BccI	CCATC	2 cut(s)	276, 317
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	348
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	82, 365
BpiI	GAAGAC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	3 cut(s)	68, 71, 155
BseSI	GKGCMC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	49, 98
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	40, 53
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
Bst4CI	ACNGT	4 cut(s)	11, 173, 337, 369
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	354, 378
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	7 cut(s)	40, 48, 82, 121, 130, 202, 384
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	87, 89, 202
Cac8I	GCNNGC	2 cut(s)	354, 378
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	158, 290, 405
CviJI	RGCY	3 cut(s)	32, 101, 347
CviKI_1	RGCY	3 cut(s)	32, 101, 347
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	7 cut(s)	39, 47, 81, 120, 129, 201, 383
DpnII	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	161, 293, 408
FaiI	YATR	8 cut(s)	21, 159, 215, 227, 291, 295, 401, 406
FatI	CATG	3 cut(s)	157, 289, 404
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	1 cut(s)	264
HapII	CCGG	2 cut(s)	49, 98
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	161, 293, 408
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	3 cut(s)	108, 192, 286
HpaII	CCGG	2 cut(s)	49, 98
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	37, 127, 187
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4III	ACNGT	4 cut(s)	11, 173, 337, 369
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	161, 293, 408
Kzo9I	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	62, 90, 111, 162, 219
LweI	GCATC	2 cut(s)	82, 365
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	7 cut(s)	39, 47, 81, 120, 129, 201, 383
MboI	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
MboII	GAAGA	5 cut(s)	74, 158, 175, 291, 291
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	5 cut(s)	46, 49, 52, 133, 136
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	49, 98
MspR9I	CCNGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
NlaIII	CATG	3 cut(s)	161, 293, 408
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	108, 192
PfoI	TCCNGGA	1 cut(s)	48
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	45
PvuI	CGATCG	1 cut(s)	384
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	7 cut(s)	37, 45, 79, 118, 127, 199, 381
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	3 cut(s)	34, 255, 349
SfaNI	GCATC	2 cut(s)	82, 365
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	11, 173, 337, 369
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	108, 192
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	3 cut(s)	89, 94, 202
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	171, 357
TspRI	CASTG	3 cut(s)	89, 94, 202
VneI	GTGCAC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	327
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.