MD00G1204500.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
49493809 .. 49495386
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1204500.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGCTGATAGGCGCCAGCACCCAACTATCACGGAAAAGTTTTCGGGTCAGCTTCATCTGAGTTCCAGCCACTATGGGGCCATCCAGCGGCCTTCCGTCAATCAAAGGCGTTTTTCATATGGAAGTTATTCAAATGCAGTATTGCAATATCCCATGAACCAAGCATGTCGAGCTAATGATCCGTTGGTGGCTTCAGGTGCCTTGCCTGTGTTTGTCCAAGCCCCAAAGGAGAAAGGATTTTCGGGCTTTGCTATTGATTTTCTAATGGGTGGCGTTTCTGCTGCTGTGTCCAAGACTGCTGCTGCTCCAATTGAGCGTGTAAAGCTCTTGATTCAAAATCAGGATGAGATGATCAAAGCCGGTAGGCTCTCTGAACCCTACAAGGGAATTGGAGATTGTTTTAGCCGAACAATGAAAGATGAGGGGATGGTATCATTGTGGCGAGGAAACACGGCAAATGTCATCCGTTACTTCCCAACTCAGGCCTTAAACTTTGCGTTTAAAGATTACTTCAAGAGGTTGTTCAATTTCAGAAAGGACAAGGATGGCTACTGGAAATGGTTTGCAGGTAACTTGGCATCCGGTGGTGCTGCTGGTGCCTCTTCTTTATTCTTTGTCTACTCTTTGGATTATGCTCGTACCCGTCTTGCAAACGATTCCAAGGCCGCAAAGAAGGGAGGAGAGAGGCAATTCAATGGCCTGGTTGATGTCTACAAAAAGACTCTCAAGTCAGATGGTGTTGCCGGCCTTTACCGCGGCTTCAACATTTCTTGTCCTGTGATCCTCACTGGAAAGTTGCAGGATAGTTTCTTTGCTAGCTTTGGTCTTGGTTGGGTTATAACCAACGGCGCCGGACTTGCATCTTACCCAATTGACACTGTCCGTAGAAGGATGATGATGACATCCGGTGAAGCCGTCAAGTACAAGAGCTCGCTTGACGCTTTCTCTCAAATCCTTAAGAATGAGGGTGCGAAGTCTCTCTTCAAGGGTGCCGGTGCCAACATTCTTCGTGCAGTTGCTGGTGCCGGGGTGCTTGCAGGTTACGACAAGCTTCAGGAGATCGTGTTCGGAAAGAAGTATGGTTCTGGTGGAGCTTAA

Protein Analysis

366

Amino Acids

39.78

Weight (kDa)

9.85

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 83 - 177 2.7e-25 Mitochondrial carrier protein
Mito_carr PF00153 186 - 258 6e-14 Mitochondrial carrier protein
Mito_carr PF00153 268 - 358 1.8e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 839
AasI GACNNNNNNGTC 1 cut(s) 727
Acc36I ACCTGC 2 cut(s) 557, 1028
AccB1I GGYRCC 7 cut(s) 12, 197, 596, 848, 989, 995, 1022
AccI GTMKAC 2 cut(s) 618, 711
AccII CGCG 1 cut(s) 756
AciI CCGC 4 cut(s) 88, 666, 754, 756
AclWI GGATC 2 cut(s) 173, 775
AcuI CTGAAG 2 cut(s) 177, 1037
AcyI GRCGYC 2 cut(s) 13, 849
AfaI GTAC 2 cut(s) 640, 923
AfiI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 7 cut(s) 132, 335, 514, 526, 694, 763, 985
AjnI CCWGG 1 cut(s) 699
AloI GAACNNNNNNTCC 2 cut(s) 1049, 1081
AluBI AGCT 7 cut(s) 52, 173, 325, 819, 930, 1051, 1094
AluI AGCT 7 cut(s) 52, 173, 325, 819, 930, 1051, 1094
Alw21I GWGCWC 1 cut(s) 932
Alw26I GTCTC 1 cut(s) 981
AlwI GGATC 2 cut(s) 173, 775
AlwNI CAGNNNCTG 1 cut(s) 1019
AoxI GGCC 6 cut(s) 78, 89, 483, 663, 697, 745
ApeKI GCWGC 4 cut(s) 281, 299, 302, 590
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 2 cut(s) 15, 851
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 1027
AsuHPI GGTGA 1 cut(s) 920
AsuNHI GCTAGC 1 cut(s) 815
BanI GGYRCC 7 cut(s) 12, 197, 596, 848, 989, 995, 1022
BanII GRGCYC 1 cut(s) 932
Bbv12I GWGCWC 1 cut(s) 932
BbvI GCAGC 4 cut(s) 268, 286, 289, 577
BccI CCATC 4 cut(s) 89, 421, 539, 728
BceAI ACGGC 3 cut(s) 468, 862, 899
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 1027
BcoDI GTCTC 1 cut(s) 981
BfaI CTAG 1 cut(s) 816
BfoI RGCGCY 2 cut(s) 16, 852
BfrI CTTAAG 1 cut(s) 956
BfuAI ACCTGC 2 cut(s) 557, 1028
BisI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
BlsI GCNGC 7 cut(s) 90, 283, 301, 304, 592, 667, 758
Bme1390I CCNGG 2 cut(s) 701, 1027
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 8 cut(s) 14, 79, 199, 598, 850, 991, 997, 1024
BmrFI CCNGG 2 cut(s) 701, 1027
BmsI GCATC 2 cut(s) 587, 869
BmtI GCTAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 1027
BsaHI GRCGYC 2 cut(s) 13, 849
BsaJI CCNNGG 3 cut(s) 660, 754, 1026
BsaWI WCCGGW 2 cut(s) 581, 905
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
Bse118I RCCGGY 3 cut(s) 359, 743, 992
Bse1I ACTGG 2 cut(s) 557, 793
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 3 cut(s) 660, 754, 1026
BseGI GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 897, 902
BseLI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
BseMII CTCAG 2 cut(s) 50, 494
BseNI ACTGG 2 cut(s) 557, 793
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 4 cut(s) 268, 286, 289, 577
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BshNI GGYRCC 7 cut(s) 12, 197, 596, 848, 989, 995, 1022
BsiHKAI GWGCWC 1 cut(s) 932
BsiSI CCGG 7 cut(s) 360, 582, 744, 852, 906, 993, 1026
BslI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
BsmAI GTCTC 1 cut(s) 981
BsnI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
Bsp1286I GDGCHC 1 cut(s) 932
Bsp143I GATC 4 cut(s) 178, 351, 780, 1059
BspACI CCGC 4 cut(s) 88, 666, 754, 756
BspANI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BspCNI CTCAG 2 cut(s) 51, 493
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 8 cut(s) 14, 79, 199, 598, 850, 991, 997, 1024
BspMI ACCTGC 2 cut(s) 557, 1028
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 2 cut(s) 173, 775
BspT107I GGYRCC 7 cut(s) 12, 197, 596, 848, 989, 995, 1022
BspTI CTTAAG 1 cut(s) 956
BsrFI RCCGGY 3 cut(s) 359, 743, 992
BsrI ACTGG 2 cut(s) 557, 793
BssAI RCCGGY 3 cut(s) 359, 743, 992
BssECI CCNNGG 3 cut(s) 660, 754, 1026
BssMI GATC 4 cut(s) 178, 351, 780, 1059
BssNI GRCGYC 2 cut(s) 13, 849
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 2 cut(s) 607, 986
BstACI GRCGYC 2 cut(s) 13, 849
BstAFI CTTAAG 1 cut(s) 956
BstC8I GCNNGC 5 cut(s) 17, 745, 817, 932, 1035
BstDEI CTNAG 2 cut(s) 59, 480
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 897, 902
BstFNI CGCG 1 cut(s) 756
BstH2I RGCGCY 2 cut(s) 16, 852
BstHHI GCGC 2 cut(s) 15, 851
BstKTI GATC 4 cut(s) 181, 354, 783, 1062
BstMAI GTCTC 1 cut(s) 981
BstMBI GATC 4 cut(s) 178, 351, 780, 1059
BstMWI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 857
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 699, 1025
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 4 cut(s) 268, 286, 289, 577
BsuRI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 897, 902
BtsIMutI CAGTG 2 cut(s) 786, 876
BveI ACCTGC 2 cut(s) 557, 1028
Cac8I GCNNGC 5 cut(s) 17, 745, 817, 932, 1035
CaiI CAGNNNCTG 1 cut(s) 1019
CfoI GCGC 2 cut(s) 15, 851
Cfr10I RCCGGY 3 cut(s) 359, 743, 992
Cfr13I GGNCC 1 cut(s) 78
Cfr42I CCGCGG 1 cut(s) 757
CseI GACGC 1 cut(s) 947
Csp6I GTAC 2 cut(s) 639, 922
CviAII CATG 2 cut(s) 154, 165
CviQI GTAC 2 cut(s) 639, 922
DdeI CTNAG 2 cut(s) 59, 480
DinI GGCGCC 2 cut(s) 14, 850
DpnI GATC 4 cut(s) 180, 353, 782, 1061
DpnII GATC 4 cut(s) 178, 351, 780, 1059
DraI TTTAAA 1 cut(s) 502
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 607, 986
EarI CTCTTC 2 cut(s) 607, 986
Ecl136II GAGCTC 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 932
Eco53kI GAGCTC 1 cut(s) 930
Eco57I CTGAAG 2 cut(s) 177, 1037
EcoICRI GAGCTC 1 cut(s) 930
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 932
EgeI GGCGCC 2 cut(s) 14, 850
EheI GGCGCC 2 cut(s) 14, 850
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 2 cut(s) 157, 168
FaiI YATR 8 cut(s) 75, 118, 120, 155, 166, 633, 839, 1080
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FatI CATG 2 cut(s) 153, 164
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 2 cut(s) 618, 711
Fnu4HI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
FokI GGATG 8 cut(s) 68, 356, 439, 449, 557, 565, 889, 904
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
FspBI CTAG 1 cut(s) 816
GlaI GCGC 2 cut(s) 14, 850
GluI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
HaeII RGCGCY 2 cut(s) 16, 852
HaeIII GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
HapII CCGG 7 cut(s) 360, 582, 744, 852, 906, 993, 1026
HgaI GACGC 1 cut(s) 947
HhaI GCGC 2 cut(s) 15, 851
Hin1I GRCGYC 2 cut(s) 13, 849
Hin1II CATG 2 cut(s) 157, 168
Hin6I GCGC 2 cut(s) 13, 849
HinP1I GCGC 2 cut(s) 13, 849
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 3 cut(s) 331, 656, 721
HpaII CCGG 7 cut(s) 360, 582, 744, 852, 906, 993, 1026
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 2 cut(s) 619, 712
Hpy188I TCNGA 5 cut(s) 60, 373, 533, 733, 1070
Hpy188III TCNNGA 4 cut(s) 328, 341, 514, 1055
Hpy8I GTNNAC 2 cut(s) 619, 712
HpyAV CCTTC 3 cut(s) 102, 667, 882
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4V TGCA 8 cut(s) 137, 145, 566, 650, 799, 860, 1013, 1037
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 857
HpyF3I CTNAG 2 cut(s) 59, 480
Hsp92I GRCGYC 2 cut(s) 13, 849
Hsp92II CATG 2 cut(s) 157, 168
HspAI GCGC 2 cut(s) 13, 849
KasI GGCGCC 2 cut(s) 12, 848
KroI GCCGGC 1 cut(s) 743
KroNI GCCGGC 1 cut(s) 745
Ksp22I TGATCA 1 cut(s) 351
KspI CCGCGG 1 cut(s) 757
Kzo9I GATC 4 cut(s) 178, 351, 780, 1059
LmnI GCTCC 2 cut(s) 310, 1091
Lsp1109I GCAGC 4 cut(s) 268, 286, 289, 577
LweI GCATC 2 cut(s) 587, 869
MaeI CTAG 1 cut(s) 816
MaeIII GTNAC 3 cut(s) 467, 569, 1040
MalI GATC 4 cut(s) 180, 353, 782, 1061
MboI GATC 4 cut(s) 178, 351, 780, 1059
MboII GAAGA 3 cut(s) 594, 973, 998
MfeI CAATTG 2 cut(s) 309, 870
MhlI GDGCHC 1 cut(s) 932
MluCI AATT 5 cut(s) 309, 387, 526, 689, 870
Mly113I GGCGCC 2 cut(s) 13, 849
MlyI GAGTC 1 cut(s) 715
MnlI CCTC 8 cut(s) 415, 437, 510, 610, 671, 678, 794, 958
MroNI GCCGGC 1 cut(s) 743
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 4 cut(s) 488, 501, 957, 1096
MspA1I CMGCKG 2 cut(s) 88, 756
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 7 cut(s) 360, 582, 744, 852, 906, 993, 1026
MspR9I CCNGG 2 cut(s) 701, 1027
MunI CAATTG 2 cut(s) 309, 870
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 857
NaeI GCCGGC 1 cut(s) 745
NarI GGCGCC 2 cut(s) 13, 849
NciI CCSGG 1 cut(s) 1027
NdeI CATATG 1 cut(s) 118
NdeII GATC 4 cut(s) 178, 351, 780, 1059
NgoMIV GCCGGC 1 cut(s) 743
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 2 cut(s) 157, 168
NlaIV GGNNCC 8 cut(s) 14, 79, 199, 598, 850, 991, 997, 1024
NspI RCATGY 1 cut(s) 168
PceI AGGCCT 1 cut(s) 485
PdiI GCCGGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 331, 656
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 7 cut(s) 90, 283, 301, 304, 592, 667, 758
PleI GAGTC 1 cut(s) 715
PluTI GGCGCC 2 cut(s) 16, 852
PpsI GAGTC 1 cut(s) 715
PsiI TTATAA 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 8 cut(s) 14, 79, 199, 598, 850, 991, 997, 1024
PspPI GGNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 1019
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 2 cut(s) 640, 923
RsaNI GTAC 2 cut(s) 639, 922
SacI GAGCTC 1 cut(s) 932
SacII CCGCGG 1 cut(s) 757
SaqAI TTAA 4 cut(s) 488, 501, 957, 1096
SatI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
Sau3AI GATC 4 cut(s) 178, 351, 780, 1059
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 701, 1027
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 2 cut(s) 587, 869
SfoI GGCGCC 2 cut(s) 14, 850
Sfr303I CCGCGG 1 cut(s) 757
SgrBI CCGCGG 1 cut(s) 757
SmlI CTYRAG 2 cut(s) 725, 956
SmoI CTYRAG 2 cut(s) 725, 956
Sse9I AATT 5 cut(s) 309, 387, 526, 689, 870
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 4 cut(s) 88, 666, 754, 756
SspDI GGCGCC 2 cut(s) 12, 848
SspMI CTAG 1 cut(s) 816
SstI GAGCTC 1 cut(s) 932
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 699, 1025
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 1 cut(s) 880
TaqI TCGA 1 cut(s) 169
TasI AATT 5 cut(s) 309, 387, 526, 689, 870
TatI WGTACW 1 cut(s) 921
TauI GCSGC 3 cut(s) 91, 668, 759
TfiI GAWTC 2 cut(s) 331, 656
Tru1I TTAA 4 cut(s) 488, 501, 957, 1096
Tru9I TTAA 4 cut(s) 488, 501, 957, 1096
TscAI CASTG 2 cut(s) 793, 883
TseI GCWGC 4 cut(s) 281, 299, 302, 590
TspDTI ATGAA 4 cut(s) 44, 105, 170, 428
TspGWI ACGGA 5 cut(s) 47, 85, 171, 455, 872
TspRI CASTG 2 cut(s) 793, 883
Tth111I GACNNNGTC 1 cut(s) 878
Vha464I CTTAAG 1 cut(s) 956
XceI RCATGY 1 cut(s) 168
XmiI GTMKAC 2 cut(s) 618, 711
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.