Rorug05G0279600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
31747685 .. 31749619
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0279600.1

Sequence Viewer

Length: 297 bp
ATGGAGCAGGGGAGTTGGCCTGAGCCTAGAGCTTGGGGTGCTCGCGGATTTTGTTGTGGGTTGGAGGGTATGTTGTTTAACATTCATGTGCTTTCCCCCTTCTCACTCTGGACTTTTATGTGCAGGGATTTGTCTTACAACTATTTATCAACAAGTCTTCCCCCATGGGATGTTGCTGTTAAGGTATTCTTCAAGCAAGAATATCCAGATGATGTGCTTCTTTCTTTTAGACAACAAGTGCCTCTCATCTCAATTTTTCTTACTGGAGACGACGTGTTCAAATGGCTTTGGATATAG

Protein Analysis

98

Amino Acids

11.49

Weight (kDa)

4.83

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 193, 280
AjiI CACGTC 1 cut(s) 274
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 285
Bpu10I CCTNAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 164
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 258, 288
Bse1I ACTGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 261
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstUI CGCG 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 164
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 43
CviAII CATG 2 cut(s) 86, 165
CviJI RGCY 4 cut(s) 19, 25, 32, 286
CviKI_1 RGCY 4 cut(s) 19, 25, 32, 286
DdeI CTNAG 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 2 cut(s) 89, 168
FaiI YATR 5 cut(s) 71, 87, 119, 166, 295
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 2 cut(s) 85, 164
FokI GGATG 1 cut(s) 182
FspBI CTAG 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 2 cut(s) 89, 168
Hpy188III TCNNGA 2 cut(s) 109, 206
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 89, 168
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 33, 94, 109, 219, 249
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 273
MboII GAAGA 2 cut(s) 149, 181
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 58, 252
MseI TTAA 2 cut(s) 78, 180
MslI CAYNNNNRTG 1 cut(s) 86
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 164
NlaIII CATG 2 cut(s) 89, 168
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 2 cut(s) 78, 180
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 34, 186, 276
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 1 cut(s) 252
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 276
TasI AATT 1 cut(s) 252
Tru1I TTAA 2 cut(s) 78, 180
Tru9I TTAA 2 cut(s) 78, 180
TspDTI ATGAA 1 cut(s) 74
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.