Rmu_ssc0000154.1_g000012

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000154.1
Physical Location & Seq
Forward (+)
66202 .. 68748
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000154.1_g000012.1.cds

Sequence Viewer

Length: 1398 bp
atgaatggtacaaaagcccatcacaacatattcaaattcaaatttgcaatagattctcgcctcctccacacaacgcccgctctctctaggaaacgcgtctttgagcatttcagcagccaagagctcaaggcggagaccctcgcagccttcaatcgcccttcattttcttgcaaggtataccaatttcgtgttctaaatctgtgtgttttcattccagagatagatgatgctggagacgcaatggttgatcaggttcaacaccctactgtcatgcaaaaggtagctggccagctccttcagcaatccattcagggatatgatactggcttccaaagacaggggatgtaccagagacgtcctgcatatggaaattactccaatgctgcattgcaatatcccatgatgccagcttgcagagctaccactgatctgtccatgattccatcaactgcatccccagtgtttgtgcaagccccggcagagaaaagccactttgtcattgatttccttatgggtggtgtttctggtgctgtatctaagaccgctgctgctcccattgagcgtgtcaagcttttggttcagaaccaggatgaaatgatcaagtctggtcggttgtctcaaccctacaagggcattggtgagtgcttctccagaacaatcaaggaagaaggatttggttcattgtggagaggaaacgctaccaacgtcatccgctacttccccactcaggcgttcaactttgcattcaaggattacttcaagaggctattcaatttcaagaaagacagggatggttattggaagtggtttgctggtaacttggcctcaggagctgcagctggtgcttcttcttctttgtttgtctactctttggactatgctcgtacccgtttgactaatgattctaagtctgtaaagatgggaggagagagacaattcaatggtctgattgatgtctacaagaagacattgaaatctgatggtattgctggtctataccgtggattcagtgtatcaattgttggtatcattgtttaccgtggtttgtactttggactgtatgattcactcaagcctgtggtcctaacgggaggtttgcaggatagtttctttgctagctttgctcttggatgggtcatcactaatggtgctggtcttgctgcctacccaatggacactgttcgtagaagaatgatgatgacctccggtgaagccgtcaagtacaagagttctttggatgcctttgcgcagatcttgaagaatgagggtgccaagtccctgttcaagggtgctggtgcaaacatcctccgtggcattgctggtgctggtgtcctttctggttatgacaagttgcagctgattgtgttcgggaagagttatggttctggatctggttaa
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.21

Weight (kDa)

9.71

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 358
Acc16I TGCGCA 1 cut(s) 1248
AccB1I GGYRCC 1 cut(s) 1268
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 3 cut(s) 177, 864, 957
AccII CGCG 1 cut(s) 96
AciI CCGC 4 cut(s) 78, 131, 543, 712
AclWI GGATC 1 cut(s) 1396
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 35, 41
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 5 cut(s) 10, 347, 886, 1049, 1223
AfiI CCNNNNNNNGG 5 cut(s) 337, 365, 629, 727, 1285
AflIII ACRYGT 1 cut(s) 94
AjnI CCWGG 1 cut(s) 585
AjuI GAANNNNNNNTTGG 6 cut(s) 174, 206, 657, 689, 1265, 1297
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 5 cut(s) 128, 228, 346, 621, 925
AlwI GGATC 1 cut(s) 1396
AlwNI CAGNNNCTG 1 cut(s) 833
AoxI GGCC 2 cut(s) 286, 822
ApeKI GCWGC 9 cut(s) 114, 143, 383, 545, 548, 833, 836, 1160, 1354
ApoI RAATTY 2 cut(s) 35, 41
AspLEI GCGC 1 cut(s) 1249
AspS9I GGNCC 1 cut(s) 1081
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 650, 1220
AsuNHI GCTAGC 1 cut(s) 1115
AvaII GGWCC 1 cut(s) 1081
AxyI CCTNAGG 1 cut(s) 826
BalI TGGCCA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 1268
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 971
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 9 cut(s) 126, 155, 370, 532, 535, 820, 848, 1147, 1366
BccI CCATC 6 cut(s) 27, 451, 785, 913, 974, 1125
BceAI ACGGC 1 cut(s) 1199
BciT130I CCWGG 1 cut(s) 587
BclI TGATCA 2 cut(s) 247, 597
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 5 cut(s) 128, 228, 346, 621, 925
BfaI CTAG 2 cut(s) 87, 1116
BfmI CTRYAG 1 cut(s) 834
BglII AGATCT 1 cut(s) 1251
BisI GCNGC 9 cut(s) 115, 144, 384, 546, 549, 834, 837, 1161, 1355
BlsI GCNGC 9 cut(s) 116, 145, 385, 547, 550, 835, 838, 1162, 1356
Bme1390I CCNGG 2 cut(s) 476, 587
Bme18I GGWCC 1 cut(s) 1081
BmgT120I GGNCC 1 cut(s) 1081
BmiI GGNNCC 1 cut(s) 1270
BmrFI CCNGG 2 cut(s) 476, 587
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 4 cut(s) 217, 393, 461, 1228
BmtI GCTAGC 1 cut(s) 1119
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 2 cut(s) 252, 634
BpuEI CTTGAG 2 cut(s) 110, 1055
BpuMI CCSGG 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 474, 1000, 1039, 1309
BsaWI WCCGGW 1 cut(s) 1205
Bsc4I CCNNNNNNNGG 5 cut(s) 337, 365, 629, 727, 1285
Bse1I ACTGG 2 cut(s) 328, 458
Bse21I CCTNAGG 1 cut(s) 826
Bse3DI GCAATG 3 cut(s) 246, 386, 1314
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 4 cut(s) 474, 1000, 1039, 1309
BseGI GGATG 8 cut(s) 348, 452, 595, 708, 796, 1136, 1243, 1302
BseLI CCNNNNNNNGG 5 cut(s) 337, 365, 629, 727, 1285
BseMI GCAATG 3 cut(s) 246, 386, 1314
BseMII CTCAG 2 cut(s) 740, 840
BseNI ACTGG 2 cut(s) 328, 458
BseRI GAGGAG 2 cut(s) 53, 939
BseXI GCAGC 9 cut(s) 126, 155, 370, 532, 535, 820, 848, 1147, 1366
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 288, 824
BshNI GGYRCC 1 cut(s) 1268
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 2 cut(s) 476, 1206
BslFI GGGAC 1 cut(s) 1261
BslI CCNNNNNNNGG 5 cut(s) 337, 365, 629, 727, 1285
BsmAI GTCTC 5 cut(s) 128, 228, 346, 621, 925
BsmBI CGTCTC 2 cut(s) 228, 346
BsmFI GGGAC 1 cut(s) 1261
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 2 cut(s) 288, 824
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 247, 427, 597, 1251, 1388
BspACI CCGC 4 cut(s) 78, 131, 543, 712
BspANI GGCC 2 cut(s) 288, 824
BspCNI CTCAG 2 cut(s) 739, 839
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 1270
BspMAI CTGCAG 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 1119
BspPI GGATC 1 cut(s) 1396
BspT107I GGYRCC 1 cut(s) 1268
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 3 cut(s) 246, 386, 1314
BsrI ACTGG 2 cut(s) 328, 458
BssECI CCNNGG 4 cut(s) 474, 1000, 1039, 1309
BssMI GATC 5 cut(s) 247, 427, 597, 1251, 1388
BssNAI GTATAC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 5 cut(s) 268, 1001, 1040, 1059, 1180
Bst6I CTCTTC 1 cut(s) 1367
BstACI GRCGYC 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 7 cut(s) 78, 286, 290, 408, 412, 471, 1117
BstDEI CTNAG 4 cut(s) 537, 726, 826, 906
BstDSI CCRYGG 3 cut(s) 1000, 1039, 1309
BstENI CCTNNNNNAGG 1 cut(s) 1283
BstF5I GGATG 8 cut(s) 348, 452, 595, 708, 796, 1136, 1243, 1302
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 1249
BstKTI GATC 5 cut(s) 250, 430, 600, 1254, 1391
BstMAI GTCTC 5 cut(s) 128, 228, 346, 621, 925
BstMBI GATC 5 cut(s) 247, 427, 597, 1251, 1388
BstMWI GCNNNNNNNGC 8 cut(s) 236, 298, 416, 568, 830, 842, 1121, 1157
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 474, 585
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 9 cut(s) 126, 155, 370, 532, 535, 820, 848, 1147, 1366
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 2 cut(s) 1251, 1388
BstYI RGATCY 2 cut(s) 1251, 1388
BstZ17I GTATAC 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 826
BsuRI GGCC 2 cut(s) 288, 824
BtgI CCRYGG 3 cut(s) 1000, 1039, 1309
BtsCI GGATG 8 cut(s) 348, 452, 595, 708, 796, 1136, 1243, 1302
BtsIMutI CAGTG 4 cut(s) 423, 465, 1015, 1176
Cac8I GCNNGC 7 cut(s) 78, 286, 290, 408, 412, 471, 1117
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 1 cut(s) 1249
Cfr13I GGNCC 1 cut(s) 1081
CseI GACGC 2 cut(s) 85, 245
Csp6I GTAC 5 cut(s) 9, 346, 885, 1048, 1222
CviAII CATG 3 cut(s) 271, 400, 436
CviQI GTAC 5 cut(s) 9, 346, 885, 1048, 1222
DdeI CTNAG 4 cut(s) 537, 726, 826, 906
DpnI GATC 5 cut(s) 249, 429, 599, 1253, 1390
DpnII GATC 5 cut(s) 247, 427, 597, 1251, 1388
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 1367
EarI CTCTTC 1 cut(s) 1367
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 1081
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 1283
EcoRII CCWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 228, 346
FaeI CATG 3 cut(s) 274, 403, 439
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 1261
FatI CATG 3 cut(s) 270, 399, 435
FauI CCCGC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 2 cut(s) 247, 597
FblI GTMKAC 3 cut(s) 177, 864, 957
Fnu4HI GCNGC 9 cut(s) 115, 144, 384, 546, 549, 834, 837, 1161, 1355
FokI GGATG 8 cut(s) 355, 439, 602, 695, 803, 1143, 1250, 1289
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 9 cut(s) 115, 144, 384, 546, 549, 834, 837, 1161, 1355
FspBI CTAG 2 cut(s) 87, 1116
FspI TGCGCA 1 cut(s) 1248
GlaI GCGC 1 cut(s) 1248
GluI GCNGC 9 cut(s) 115, 144, 384, 546, 549, 834, 837, 1161, 1355
GsuI CTGGAG 2 cut(s) 252, 634
HaeIII GGCC 2 cut(s) 288, 824
HapII CCGG 2 cut(s) 476, 1206
HgaI GACGC 2 cut(s) 85, 245
HhaI GCGC 1 cut(s) 1249
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 3 cut(s) 274, 403, 439
Hin6I GCGC 1 cut(s) 1247
HinP1I GCGC 1 cut(s) 1247
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 53, 439, 902, 1005, 1064
HpaII CCGG 2 cut(s) 476, 1206
HphI GGTGA 2 cut(s) 650, 1220
Hpy166II GTNNAC 4 cut(s) 178, 865, 958, 1036
Hpy188I TCNGA 3 cut(s) 582, 948, 979
Hpy188III TCNNGA 8 cut(s) 215, 651, 760, 778, 828, 1255, 1369, 1386
Hpy8I GTNNAC 4 cut(s) 178, 865, 958, 1036
HpyAV CCTTC 4 cut(s) 157, 168, 305, 662
HpyCH4III ACNGT 5 cut(s) 268, 1001, 1040, 1059, 1180
HpyCH4IV ACGT 2 cut(s) 355, 705
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 298, 416, 568, 830, 842, 1121, 1157
HpyF3I CTNAG 4 cut(s) 537, 726, 826, 906
HpySE526I ACGT 2 cut(s) 355, 705
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 3 cut(s) 274, 403, 439
HspAI GCGC 1 cut(s) 1247
Ksp22I TGATCA 2 cut(s) 247, 597
Kzo9I GATC 5 cut(s) 247, 427, 597, 1251, 1388
LmnI GCTCC 3 cut(s) 297, 556, 830
Lsp1109I GCAGC 9 cut(s) 126, 155, 370, 532, 535, 820, 848, 1147, 1366
LweI GCATC 4 cut(s) 217, 393, 461, 1228
MaeI CTAG 2 cut(s) 87, 1116
MaeII ACGT 2 cut(s) 355, 705
MaeIII GTNAC 1 cut(s) 815
MalI GATC 5 cut(s) 249, 429, 599, 1253, 1390
MbiI CCGCTC 1 cut(s) 80
MboI GATC 5 cut(s) 247, 427, 597, 1251, 1388
MboII GAAGA 7 cut(s) 677, 840, 843, 976, 1200, 1270, 1384
MfeI CAATTG 1 cut(s) 1017
MflI RGATCY 2 cut(s) 1251, 1388
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 7 cut(s) 35, 41, 182, 370, 772, 935, 1017
MluI ACGCGT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 288
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
MseI TTAA 1 cut(s) 1396
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 3 cut(s) 545, 839, 1357
MspI CCGG 2 cut(s) 476, 1206
MspR9I CCNGG 2 cut(s) 476, 587
MunI CAATTG 1 cut(s) 1017
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 8 cut(s) 236, 298, 416, 568, 830, 842, 1121, 1157
NciI CCSGG 1 cut(s) 476
NdeI CATATG 1 cut(s) 364
NdeII GATC 5 cut(s) 247, 427, 597, 1251, 1388
NheI GCTAGC 1 cut(s) 1115
NlaIII CATG 3 cut(s) 274, 403, 439
NlaIV GGNNCC 1 cut(s) 1270
NsbI TGCGCA 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 5 cut(s) 53, 439, 902, 1005, 1064
PkrI GCNGC 9 cut(s) 116, 145, 385, 547, 550, 835, 838, 1162, 1356
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 1270
PspPI GGNCC 1 cut(s) 1081
PstI CTGCAG 1 cut(s) 838
PstNI CAGNNNCTG 1 cut(s) 833
PsuI RGATCY 2 cut(s) 1251, 1388
PvuII CAGCTG 2 cut(s) 839, 1357
RsaI GTAC 5 cut(s) 10, 347, 886, 1049, 1223
RsaNI GTAC 5 cut(s) 9, 346, 885, 1048, 1222
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 1396
SatI GCNGC 9 cut(s) 115, 144, 384, 546, 549, 834, 837, 1161, 1355
Sau3AI GATC 5 cut(s) 247, 427, 597, 1251, 1388
Sau96I GGNCC 1 cut(s) 1081
ScrFI CCNGG 2 cut(s) 476, 587
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 4 cut(s) 217, 393, 461, 1228
SfcI CTRYAG 1 cut(s) 834
SinI GGWCC 1 cut(s) 1081
SmlI CTYRAG 2 cut(s) 125, 1070
SmoI CTYRAG 2 cut(s) 125, 1070
Sse9I AATT 7 cut(s) 35, 41, 182, 370, 772, 935, 1017
SsiI CCGC 4 cut(s) 78, 131, 543, 712
SspMI CTAG 2 cut(s) 87, 1116
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 474, 585
TaaI ACNGT 5 cut(s) 268, 1001, 1040, 1059, 1180
TaiI ACGT 2 cut(s) 358, 708
TasI AATT 7 cut(s) 35, 41, 182, 370, 772, 935, 1017
TatI WGTACW 2 cut(s) 1047, 1221
TfiI GAWTC 5 cut(s) 53, 439, 902, 1005, 1064
Tru1I TTAA 1 cut(s) 1396
Tru9I TTAA 1 cut(s) 1396
TscAI CASTG 4 cut(s) 430, 465, 1015, 1183
TseI GCWGC 9 cut(s) 114, 143, 383, 545, 548, 833, 836, 1160, 1354
TspDTI ATGAA 5 cut(s) 17, 150, 199, 606, 669
TspGWI ACGGA 1 cut(s) 1298
TspRI CASTG 4 cut(s) 430, 465, 1015, 1183
VpaK11BI GGWCC 1 cut(s) 1081
XagI CCTNNNNNAGG 1 cut(s) 1283
XapI RAATTY 2 cut(s) 35, 41
XmiI GTMKAC 3 cut(s) 177, 864, 957
XspI CTAG 2 cut(s) 87, 1116
ZraI GACGTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.