FvH4_7g00920

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001633
Physical Location & Seq
Forward (+)
1379920 .. 1381164
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00920.t1

Sequence Viewer

Length: 1158 bp
ATGGTTGATCAGGTTCAACACCCCACTGTCATGCAAAAGGTAGCTGGCCAGCTCCTTCAGCAATCCATTCAGGGTTACGATACTGGCTTCCAAAGACAAGGGATGTACCAGAGACGTCCTGCGTATGGAAATTACTCCAACGCTGCATCGCAGTACCCTGTGATGACAGCTTGCAGGGCTACCGCTGATCTATCAATGATCCCATCAACTGCATCTCCAGTTTTTGTGCAAGCCCCCGCAGAGAAAGGCCACTTTTTCGTTGATTTCCTTATGGGTGGTGTTTCTGCTGCTGTATCTAAGACCGCTGCTGCTCCCATCGAGCGTGTTAAGCTTTTGATTCAGAACCAGGATGAAATGATCAAGGCTGGTCGTTTGTCTGAACCCTACAAGGGCATTGGTGAGTGCTTCTCCCGAACAATCAAGGAAGAAGGATTCAGTTCGTTGTGGAGAGGAAATACTGCCAACGTCATCCGTTACTTCCCCACTCAGGCGTTCAACTTTGCATTCAAGGATTACTTCAAGAGGCTATTCAATTTCAAGAAAGATAGGGATGGTTATTGGAAGTGGTTTGCTGGTAACTTGGCCTCAGGAAGTGCAGCTGGTGCTGCTTCTTCTTTCTTTGTCTACTCTTTGGACTATGCTCGTACCCGTTTGACTAGTGATGCTAAGGCTGTAAAGCAGGGAGGAGAAAGACAATTCAATGGTCTGGTTGATGTCTACAGGAAGACATTGAAATCTGATGGTATTGTTGGTCTATACCGTGGATTCAATGTATCATGTGTTGGTATCATTGTTTACCGTGGTCTGTACTTTGGACTCTACGATTCAATCAAGCCTGTGGTCCTGACTGGAGGTTTGCAGGATAGTTTCTTCGCTAGCTTTGCTCTTGGATGGGTCATCACAATTAATGCTGGTCTTGCTTCCTACCCATTTGACACTGTTCGTAGAAGAATGATGATGACCTCTGGTGAAGCCGTCAAGTACAAGAGTTCAATTGATGCCTTTGCTCAGATCTTGAAGAATGAGGGTGCCAAATCCCTGTTCAAGGGTGCTGGTGCAAACATCCTTCGTGCTGTTGCTGGTGCTGGTGTCCTTTCTGGTTATGACAAGTTGCAGCTGGTTGTGTTCGGAAAGAAGTATGGGTCTGGATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

386

Amino Acids

42.17

Weight (kDa)

9.72

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 84 - 180 5.9e-26 Mitochondrial carrier protein
Mito_carr PF00153 188 - 281 1.9e-20 Mitochondrial carrier protein
Mito_carr PF00153 288 - 376 7.3e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 1028
AccI GTMKAC 2 cut(s) 624, 717
AciI CCGC 3 cut(s) 183, 237, 303
AclWI GGATC 2 cut(s) 193, 1156
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 5 cut(s) 107, 155, 646, 809, 983
AfiI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 1 cut(s) 345
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AluBI AGCT 7 cut(s) 44, 52, 170, 331, 599, 879, 1117
AluI AGCT 7 cut(s) 44, 52, 170, 331, 599, 879, 1117
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 193, 1156
AoxI GGCC 3 cut(s) 46, 247, 582
ApeKI GCWGC 7 cut(s) 143, 287, 305, 308, 596, 605, 1114
ArsI GACNNNNNNTTYG 2 cut(s) 838, 870
AseI ATTAAT 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 841
AsuHPI GGTGA 2 cut(s) 410, 980
AsuNHI GCTAGC 1 cut(s) 875
AvaII GGWCC 1 cut(s) 841
AxyI CCTNAGG 1 cut(s) 586
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 7 cut(s) 130, 274, 292, 295, 592, 608, 1126
BccI CCATC 5 cut(s) 211, 323, 545, 734, 885
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 2 cut(s) 7, 357
BcoDI GTCTC 1 cut(s) 106
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 2 cut(s) 657, 876
BfmI CTRYAG 1 cut(s) 718
BglII AGATCT 1 cut(s) 1011
BisI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 606, 1115
BlsI GCNGC 7 cut(s) 145, 289, 307, 310, 598, 607, 1116
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 841
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 1 cut(s) 1030
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 4 cut(s) 155, 221, 652, 988
BmtI GCTAGC 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 731
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 2 cut(s) 201, 870
Bpu10I CCTNAGC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 760, 799
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
Bse1I ACTGG 3 cut(s) 88, 218, 853
Bse21I CCTNAGG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 760, 799
BseGI GGATG 6 cut(s) 108, 355, 468, 556, 896, 1062
BseLI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
BseMII CTCAG 3 cut(s) 500, 600, 1022
BseNI ACTGG 3 cut(s) 88, 218, 853
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 7 cut(s) 130, 274, 292, 295, 592, 608, 1126
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 3 cut(s) 48, 249, 584
BshNI GGYRCC 1 cut(s) 1028
BslI CCNNNNNNNGG 4 cut(s) 125, 389, 487, 1045
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 3 cut(s) 48, 249, 584
Bsp143I GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
BspACI CCGC 3 cut(s) 183, 237, 303
BspANI GGCC 3 cut(s) 48, 249, 584
BspCNI CTCAG 3 cut(s) 499, 599, 1021
BspLI GGNNCC 1 cut(s) 1030
BspOI GCTAGC 1 cut(s) 879
BspPI GGATC 2 cut(s) 193, 1156
BspT107I GGYRCC 1 cut(s) 1028
BsrI ACTGG 3 cut(s) 88, 218, 853
BssECI CCNNGG 2 cut(s) 760, 799
BssMI GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 28, 761, 800, 940
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 46, 50, 172, 231, 877
BstDEI CTNAG 5 cut(s) 297, 486, 586, 666, 1008
BstDSI CCRYGG 2 cut(s) 760, 799
BstENI CCTNNNNNAGG 1 cut(s) 1043
BstF5I GGATG 6 cut(s) 108, 355, 468, 556, 896, 1062
BstKTI GATC 6 cut(s) 10, 190, 201, 360, 1014, 1151
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
BstMWI GCNNNNNNNGC 7 cut(s) 58, 176, 328, 602, 605, 881, 917
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 718
BstV1I GCAGC 7 cut(s) 130, 274, 292, 295, 592, 608, 1126
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 2 cut(s) 1011, 1148
BstYI RGATCY 2 cut(s) 1011, 1148
Bsu36I CCTNAGG 1 cut(s) 586
BsuRI GGCC 3 cut(s) 48, 249, 584
BtgI CCRYGG 2 cut(s) 760, 799
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 6 cut(s) 108, 355, 468, 556, 896, 1062
BtsIMutI CAGTG 2 cut(s) 24, 936
Cac8I GCNNGC 5 cut(s) 46, 50, 172, 231, 877
Cfr13I GGNCC 1 cut(s) 841
Csp6I GTAC 5 cut(s) 106, 154, 645, 808, 982
CviAII CATG 2 cut(s) 31, 777
CviQI GTAC 5 cut(s) 106, 154, 645, 808, 982
DdeI CTNAG 5 cut(s) 297, 486, 586, 666, 1008
DpnI GATC 6 cut(s) 9, 189, 200, 359, 1013, 1150
DpnII GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
EaeI YGGCCR 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 1043
EcoRII CCWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 2 cut(s) 34, 780
FaiI YATR 8 cut(s) 32, 126, 272, 639, 757, 778, 1104, 1140
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 2 cut(s) 30, 776
FauI CCCGC 1 cut(s) 244
FbaI TGATCA 2 cut(s) 7, 357
FblI GTMKAC 2 cut(s) 624, 717
Fnu4HI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 606, 1115
FokI GGATG 6 cut(s) 115, 362, 455, 563, 903, 1049
Fsp4HI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 606, 1115
FspBI CTAG 2 cut(s) 657, 876
GluI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 606, 1115
GsuI CTGGAG 2 cut(s) 201, 870
HaeIII GGCC 3 cut(s) 48, 249, 584
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 2 cut(s) 34, 780
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 5 cut(s) 337, 432, 765, 816, 824
HphI GGTGA 2 cut(s) 410, 980
Hpy166II GTNNAC 3 cut(s) 625, 718, 796
Hpy188I TCNGA 5 cut(s) 342, 379, 739, 1011, 1130
Hpy188III TCNNGA 7 cut(s) 411, 520, 538, 588, 844, 1015, 1146
Hpy8I GTNNAC 3 cut(s) 625, 718, 796
HpyAV CCTTC 3 cut(s) 65, 422, 1076
HpyCH4III ACNGT 4 cut(s) 28, 761, 800, 940
HpyCH4IV ACGT 2 cut(s) 115, 465
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 176, 328, 602, 605, 881, 917
HpyF3I CTNAG 5 cut(s) 297, 486, 586, 666, 1008
HpySE526I ACGT 2 cut(s) 115, 465
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 34, 780
Ksp22I TGATCA 2 cut(s) 7, 357
Kzo9I GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
LmnI GCTCC 2 cut(s) 57, 316
Lsp1109I GCAGC 7 cut(s) 130, 274, 292, 295, 592, 608, 1126
LweI GCATC 4 cut(s) 155, 221, 652, 988
MaeI CTAG 2 cut(s) 657, 876
MaeII ACGT 2 cut(s) 115, 465
MaeIII GTNAC 3 cut(s) 74, 473, 575
MalI GATC 6 cut(s) 9, 189, 200, 359, 1013, 1150
MboI GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
MboII GAAGA 6 cut(s) 437, 603, 736, 862, 960, 1030
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 2 cut(s) 1011, 1148
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 130, 532, 695, 903, 993
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 443, 516, 595, 677, 845, 973, 1018
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 327, 906, 1156
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 4 cut(s) 185, 305, 599, 1117
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 7 cut(s) 58, 176, 328, 602, 605, 881, 917
NdeII GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
NheI GCTAGC 1 cut(s) 875
NlaIII CATG 2 cut(s) 34, 780
NlaIV GGNNCC 1 cut(s) 1030
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 337, 432, 765, 824
PkrI GCNGC 7 cut(s) 145, 289, 307, 310, 598, 607, 1116
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
PshBI ATTAAT 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 1030
PspPI GGNCC 1 cut(s) 841
PsuI RGATCY 2 cut(s) 1011, 1148
PvuII CAGCTG 2 cut(s) 599, 1117
RsaI GTAC 5 cut(s) 107, 155, 646, 809, 983
RsaNI GTAC 5 cut(s) 106, 154, 645, 808, 982
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 327, 906, 1156
SatI GCNGC 7 cut(s) 144, 288, 306, 309, 597, 606, 1115
Sau3AI GATC 6 cut(s) 7, 187, 198, 357, 1011, 1148
Sau96I GGNCC 1 cut(s) 841
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 4 cut(s) 155, 221, 652, 988
SfcI CTRYAG 1 cut(s) 718
SinI GGWCC 1 cut(s) 841
SmiMI CAYNNNNRTG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 5 cut(s) 130, 532, 695, 903, 993
SsiI CCGC 3 cut(s) 183, 237, 303
SspMI CTAG 2 cut(s) 657, 876
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 4 cut(s) 28, 761, 800, 940
TaiI ACGT 2 cut(s) 118, 468
TaqI TCGA 1 cut(s) 318
TasI AATT 5 cut(s) 130, 532, 695, 903, 993
TatI WGTACW 2 cut(s) 807, 981
TfiI GAWTC 4 cut(s) 337, 432, 765, 824
Tru1I TTAA 3 cut(s) 327, 906, 1156
Tru9I TTAA 3 cut(s) 327, 906, 1156
TscAI CASTG 2 cut(s) 31, 943
TseI GCWGC 7 cut(s) 143, 287, 305, 308, 596, 605, 1114
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 31, 943
VpaK11BI GGWCC 1 cut(s) 841
VspI ATTAAT 1 cut(s) 906
XagI CCTNNNNNAGG 1 cut(s) 1043
XmiI GTMKAC 2 cut(s) 624, 717
XspI CTAG 2 cut(s) 657, 876
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.