Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001633

Physical Location & Seq

Genomic Coordinates Forward (+)

16216372 .. 16219252

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G244400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTGATAGGCACCAAGATCCAACTGCTATGCAAAAGTTTTCTGGTCAGCTACATCTGGGTTCCAGCCTTTCTCAAGATTCCCACAGCCACTATGGGGGCTTCCAGAGGCCTGCTCTCAATCAAAGGCGTTTCGCATACGGAAATTATTCTAATGCAGCATTGGAGTATCCAATGAACCACACATGTCGAGCTAATGATCCATTGGTGGCTTCAGGTGTCTTACCTGTGTGTGTCCAAGCCCCAAAAGAGAAAGGATTTTCGGGCTTCGCTATTGATTTCTTAATGGGTGGTGTTTCTGCTGCTGTGTCCAAGACTGCTGCTGCTCCAATTGAGCGCGTAAAGCTCTTGATTCAGAATCAGGATGAGATGATCAAGGCTGGTAGGCTTTCTGAACCCTACAAGGGAATCGGAGACTGTTTTAGCCGAACTATGAAAGACGAGGGAATGGTAGCATTGTGGAGAGGGAACACAGCAAATGTCATCCGTTACTTCCCAACTCAGGCCTTAAACTTTGCGTTTAAAGATTACTTCAAGAGCCTGTTCAACTTCAAGAAGGACAGGGATGGCTACTGGAAATGGTTTGCAGGTAACTTGGCATCTGGTGGTGCTGCTGGTGCCTCTTCTTTATTCTTTGTCTATTCTTTGGACTATGCTCGTACCCGTCTTGCAAATGACTCCAAGGCTGCAAAGAAGGGAGGAGAGAGGCAATTCAATGGCTTGGTTGATGTCTACAAAAAGACTCTCAAGTCAGATGGCATTGCTGGCCTTTACCGTGGCTTCAACATTTCTTGTGTTGGCATCATCGTGTACCGTGGTCTGTACTTTGGAATGTATGATTCTTTGAAGCCTGTGATCCTCACTGGAAAGCTGCAGGATAGTTTCTTTGCTAGCTTTGGTCTTGGTTGGGTTATCACCAACGGCGCTGGACTTGCTTCTTACCCAATTGACACTGTCCGTAGAAGGATGATGATGACGTCTGGTGAAGCCGTCAAGTACAAGAGCTCGCTCGACGCTTTCTCTCAGATCCTGAAGAATGAGGGTGCAAAATCTCTCTTCAAGGGTGCCGGTGCTAATATTCTTCGTGCAGTTGCTGGTGCTGGTGTGCTTGCGGGTTATGACAAGCTTCAGGTGCTAGTGTTTGGAAAGAAGTATGGTTCTGGTGGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

391

Amino Acids

42.45

Weight (kDa)

9.68

Isoelectric Point (pI)

23.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08580 AT3G08580 AT5G13490 AT5G13490
fragaria_vesca	FvH4_3g29080 FvH4_3g29080 FvH4_3g29080 FvH4_7g00912 FvH4_7g00912 FvH4_7g00920
malus_domestica	MD00G1204500.v1.1 MD03G1178500.v1.1 MD07G1008900.v1.1 MD07G1009000.v1.1 MD07G1009200.v1.1 MD11G1198100.v1.1
prunus_persica	Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.2G012200_v2.0.a1 Prupe.4G244400_v2.0.a1 Prupe.4G244400_v2.0.a1
pyrus_communis	pycom03g13500 pycom07g00770
rosa_chinensis	RchiOBHm_Chr1g0315841 RchiOBHm_Chr1g0315851 RchiOBHm_Chr5g0051451
rosa_laevigata	RLG00000030729 RLG00000034875
rosa_multiflora	Rmu_co8322969.1_g000001 Rmu_sc0022189.1_g000005 Rmu_sc0023933.1_g000005 Rmu_ssc0000154.1_g000011 Rmu_ssc0000154.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027060 Rroxscaffold_4G00331380 Rroxscaffold_4G00331400
rosa_rugosa	Rorug01G0006100 Rorug01G0006100 Rorug01G0006200 Rorug05G0279300 Rorug05G0279400 Rorug05G0279500 Rorug05G0279600
rosa_samantha	Rh1AG017100 Rh1AG017200 Rh5CG387300
rosa_wichuraiana	Rw1G001010 Rw1G001020 Rw5G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
AatII	GACGTC	1 cut(s)	980
Acc36I	ACCTGC	1 cut(s)	578
AccB1I	GGYRCC	3 cut(s)	12, 617, 1064
AccI	GTMKAC	1 cut(s)	732
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	1112
AclWI	GGATC	4 cut(s)	14, 194, 850, 1021
AcuI	CTGAAG	3 cut(s)	198, 1052, 1112
AcyI	GRCGYC	1 cut(s)	977
AfaI	GTAC	4 cut(s)	661, 812, 824, 998
AfiI	CCNNNNNNNGG	3 cut(s)	97, 404, 502
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	7 cut(s)	535, 547, 553, 715, 784, 847, 1060
AluBI	AGCT	7 cut(s)	52, 194, 346, 871, 894, 1005, 1126
AluI	AGCT	7 cut(s)	52, 194, 346, 871, 894, 1005, 1126
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	4 cut(s)	14, 194, 850, 1021
AlwNI	CAGNNNCTG	2 cut(s)	1030, 1094
AoxI	GGCC	3 cut(s)	110, 504, 766
ApeKI	GCWGC	7 cut(s)	158, 302, 320, 323, 611, 686, 871
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	339, 926
AsuHPI	GGTGA	2 cut(s)	907, 995
AsuNHI	GCTAGC	1 cut(s)	890
BanI	GGYRCC	3 cut(s)	12, 617, 1064
BanII	GRGCYC	1 cut(s)	1007
Bbv12I	GWGCWC	1 cut(s)	1007
BbvI	GCAGC	7 cut(s)	170, 289, 307, 310, 598, 673, 858
BccI	CCATC	2 cut(s)	560, 749
BceAI	ACGGC	2 cut(s)	937, 974
BciVI	GTATCC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	891, 1136
BfmI	CTRYAG	1 cut(s)	872
BfoI	RGCGCY	1 cut(s)	927
BfuAI	ACCTGC	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	7 cut(s)	159, 303, 321, 324, 612, 687, 872
BlsI	GCNGC	7 cut(s)	160, 304, 322, 325, 613, 688, 873
BmiI	GGNNCC	4 cut(s)	14, 64, 619, 1066
BmsI	GCATC	2 cut(s)	608, 810
BmtI	GCTAGC	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuEI	CTTGAG	2 cut(s)	60, 731
BsaHI	GRCGYC	1 cut(s)	977
BsaJI	CCNNGG	3 cut(s)	681, 775, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 404, 502
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	2 cut(s)	578, 868
Bse3DI	GCAATG	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	681, 775, 814
BseGI	GGATG	4 cut(s)	370, 483, 571, 972
BseLI	CCNNNNNNNGG	3 cut(s)	97, 404, 502
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	515, 1037
BseNI	ACTGG	2 cut(s)	578, 868
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	7 cut(s)	170, 289, 307, 310, 598, 673, 858
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	112, 506, 768
BshNI	GGYRCC	3 cut(s)	12, 617, 1064
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiSI	CCGG	1 cut(s)	1068
BslI	CCNNNNNNNGG	3 cut(s)	97, 404, 502
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	112, 506, 768
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp143I	GATC	5 cut(s)	19, 199, 372, 855, 1026
BspACI	CCGC	1 cut(s)	1112
BspANI	GGCC	3 cut(s)	112, 506, 768
BspCNI	CTCAG	2 cut(s)	514, 1036
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	4 cut(s)	14, 64, 619, 1066
BspMAI	CTGCAG	1 cut(s)	876
BspMI	ACCTGC	1 cut(s)	578
BspOI	GCTAGC	1 cut(s)	894
BspPI	GGATC	4 cut(s)	14, 194, 850, 1021
BspT107I	GGYRCC	3 cut(s)	12, 617, 1064
BsrDI	GCAATG	1 cut(s)	759
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	578, 868
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	3 cut(s)	681, 775, 814
BssMI	GATC	5 cut(s)	19, 199, 372, 855, 1026
BssNI	GRCGYC	1 cut(s)	977
BssT1I	CCWWGG	1 cut(s)	681
Bst4CI	ACNGT	4 cut(s)	419, 776, 815, 955
Bst6I	CTCTTC	2 cut(s)	628, 1061
BstACI	GRCGYC	1 cut(s)	977
BstC8I	GCNNGC	5 cut(s)	114, 766, 892, 1007, 1110
BstDEI	CTNAG	2 cut(s)	501, 1023
BstDSI	CCRYGG	2 cut(s)	775, 814
BstF5I	GGATG	4 cut(s)	370, 483, 571, 972
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	927
BstHHI	GCGC	2 cut(s)	339, 926
BstKTI	GATC	5 cut(s)	22, 202, 375, 858, 1029
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	5 cut(s)	19, 199, 372, 855, 1026
BstMWI	GCNNNNNNNGC	5 cut(s)	343, 617, 765, 932, 1132
BstNSI	RCATGY	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	872
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	7 cut(s)	170, 289, 307, 310, 598, 673, 858
BstX2I	RGATCY	2 cut(s)	19, 1026
BstYI	RGATCY	2 cut(s)	19, 1026
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	112, 506, 768
BtgI	CCRYGG	2 cut(s)	775, 814
BtsCI	GGATG	4 cut(s)	370, 483, 571, 972
BtsIMutI	CAGTG	2 cut(s)	861, 951
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	5 cut(s)	114, 766, 892, 1007, 1110
CaiI	CAGNNNCTG	2 cut(s)	1030, 1094
CfoI	GCGC	2 cut(s)	339, 926
Cfr10I	RCCGGY	1 cut(s)	1067
CseI	GACGC	1 cut(s)	1022
Csp6I	GTAC	4 cut(s)	660, 811, 823, 997
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	4 cut(s)	660, 811, 823, 997
DdeI	CTNAG	2 cut(s)	501, 1023
DpnI	GATC	5 cut(s)	21, 201, 374, 857, 1028
DpnII	GATC	5 cut(s)	19, 199, 372, 855, 1026
DraI	TTTAAA	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	628, 1061
EarI	CTCTTC	2 cut(s)	628, 1061
Ecl136II	GAGCTC	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	681
Eco147I	AGGCCT	2 cut(s)	112, 506
Eco24I	GRGCYC	1 cut(s)	1007
Eco53kI	GAGCTC	1 cut(s)	1005
Eco57I	CTGAAG	3 cut(s)	198, 1052, 1112
EcoICRI	GAGCTC	1 cut(s)	1005
EcoT14I	CCWWGG	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	1007
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	1 cut(s)	189
FaiI	YATR	9 cut(s)	32, 96, 139, 187, 434, 654, 837, 1119, 1155
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	1105
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	7 cut(s)	159, 303, 321, 324, 612, 687, 872
FokI	GGATG	4 cut(s)	377, 470, 578, 979
FriOI	GRGCYC	1 cut(s)	1007
Fsp4HI	GCNGC	7 cut(s)	159, 303, 321, 324, 612, 687, 872
FspBI	CTAG	2 cut(s)	891, 1136
GlaI	GCGC	2 cut(s)	338, 925
GluI	GCNGC	7 cut(s)	159, 303, 321, 324, 612, 687, 872
HaeII	RGCGCY	1 cut(s)	927
HaeIII	GGCC	3 cut(s)	112, 506, 768
HapII	CCGG	1 cut(s)	1068
HgaI	GACGC	1 cut(s)	1022
HhaI	GCGC	2 cut(s)	339, 926
Hin1I	GRCGYC	1 cut(s)	977
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	2 cut(s)	337, 924
HinP1I	GCGC	2 cut(s)	337, 924
HindIII	AAGCTT	1 cut(s)	1124
HinfI	GANTC	7 cut(s)	80, 352, 358, 408, 677, 742, 839
HpaII	CCGG	1 cut(s)	1068
HphI	GGTGA	2 cut(s)	907, 995
Hpy166II	GTNNAC	2 cut(s)	733, 811
Hpy188I	TCNGA	5 cut(s)	357, 394, 413, 754, 1026
Hpy188III	TCNNGA	7 cut(s)	77, 106, 349, 362, 535, 553, 1030
Hpy8I	GTNNAC	2 cut(s)	733, 811
Hpy99I	CGWCG	1 cut(s)	1016
HpyAV	CCTTC	3 cut(s)	550, 688, 957
HpyCH4III	ACNGT	4 cut(s)	419, 776, 815, 955
HpyCH4IV	ACGT	1 cut(s)	977
HpyCH4V	TGCA	8 cut(s)	34, 158, 587, 671, 689, 874, 1046, 1088
HpyF10VI	GCNNNNNNNGC	5 cut(s)	343, 617, 765, 932, 1132
HpyF3I	CTNAG	2 cut(s)	501, 1023
HpySE526I	ACGT	1 cut(s)	977
Hsp92I	GRCGYC	1 cut(s)	977
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	2 cut(s)	337, 924
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	19, 199, 372, 855, 1026
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	7 cut(s)	170, 289, 307, 310, 598, 673, 858
LweI	GCATC	2 cut(s)	608, 810
MaeI	CTAG	2 cut(s)	891, 1136
MaeII	ACGT	1 cut(s)	977
MaeIII	GTNAC	2 cut(s)	488, 590
MalI	GATC	5 cut(s)	21, 201, 374, 857, 1028
MboI	GATC	5 cut(s)	19, 199, 372, 855, 1026
MboII	GAAGA	4 cut(s)	615, 1045, 1048, 1073
MfeI	CAATTG	2 cut(s)	330, 945
MflI	RGATCY	2 cut(s)	19, 1026
MhlI	GDGCHC	1 cut(s)	1007
MluCI	AATT	4 cut(s)	145, 330, 710, 945
MlyI	GAGTC	2 cut(s)	671, 736
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	102, 436, 458, 631, 692, 699, 869, 1033
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	4 cut(s)	284, 509, 522, 1171
MslI	CAYNNNNRTG	1 cut(s)	806
MspI	CCGG	1 cut(s)	1068
MunI	CAATTG	2 cut(s)	330, 945
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	343, 617, 765, 932, 1132
NdeII	GATC	5 cut(s)	19, 199, 372, 855, 1026
NheI	GCTAGC	1 cut(s)	890
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	4 cut(s)	14, 64, 619, 1066
NspI	RCATGY	1 cut(s)	189
PceI	AGGCCT	2 cut(s)	112, 506
PciI	ACATGT	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	5 cut(s)	80, 352, 358, 408, 839
PflFI	GACNNNGTC	1 cut(s)	953
PkrI	GCNGC	7 cut(s)	160, 304, 322, 325, 613, 688, 873
PleI	GAGTC	2 cut(s)	671, 736
PpsI	GAGTC	2 cut(s)	671, 736
PscI	ACATGT	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	1007
PspN4I	GGNNCC	4 cut(s)	14, 64, 619, 1066
PstI	CTGCAG	1 cut(s)	876
PstNI	CAGNNNCTG	2 cut(s)	1030, 1094
PsuI	RGATCY	2 cut(s)	19, 1026
PsyI	GACNNNGTC	1 cut(s)	953
RsaI	GTAC	4 cut(s)	661, 812, 824, 998
RsaNI	GTAC	4 cut(s)	660, 811, 823, 997
RseI	CAYNNNNRTG	1 cut(s)	806
SacI	GAGCTC	1 cut(s)	1007
SaqAI	TTAA	4 cut(s)	284, 509, 522, 1171
SatI	GCNGC	7 cut(s)	159, 303, 321, 324, 612, 687, 872
Sau3AI	GATC	5 cut(s)	19, 199, 372, 855, 1026
SchI	GAGTC	2 cut(s)	671, 736
SduI	GDGCHC	1 cut(s)	1007
SfaNI	GCATC	2 cut(s)	608, 810
SfcI	CTRYAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	2 cut(s)	75, 746
SmoI	CTYRAG	2 cut(s)	75, 746
Sse9I	AATT	4 cut(s)	145, 330, 710, 945
SseBI	AGGCCT	2 cut(s)	112, 506
SsiI	CCGC	1 cut(s)	1112
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	2 cut(s)	891, 1136
SstI	GAGCTC	1 cut(s)	1007
StuI	AGGCCT	2 cut(s)	112, 506
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	4 cut(s)	419, 776, 815, 955
TaiI	ACGT	1 cut(s)	980
TaqI	TCGA	2 cut(s)	190, 1011
TasI	AATT	4 cut(s)	145, 330, 710, 945
TatI	WGTACW	2 cut(s)	822, 996
TfiI	GAWTC	5 cut(s)	80, 352, 358, 408, 839
Tru1I	TTAA	4 cut(s)	284, 509, 522, 1171
Tru9I	TTAA	4 cut(s)	284, 509, 522, 1171
TscAI	CASTG	2 cut(s)	868, 958
TseI	GCWGC	7 cut(s)	158, 302, 320, 323, 611, 686, 871
TspDTI	ATGAA	2 cut(s)	191, 449
TspGWI	ACGGA	3 cut(s)	156, 476, 947
TspRI	CASTG	2 cut(s)	868, 958
Tth111I	GACNNNGTC	1 cut(s)	953
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	2 cut(s)	891, 1136
ZraI	GACGTC	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.