MD11G1198100.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
28525332 .. 28526767
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1198100.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGCTGATAGGCGCCAGCACCCAACTATCACGGAAAAGTTTTCGGGTCAGCTTCATCTGAGTTCCAGCCACTATGGGGCCATCCAGCGGCCTTCCGTCAATCAAAGGCGTTTTTCATATGGAAGTTATTCAAATGCAGTATTGCAATATCCCATGAACCAAGCATGTCGAGCTAATGATCCGTTGGTGGCTTCAGGTGCCTTGCCTGTGTTTGTCCAAGCCCCAAAGGAGAAAGGATTTTCGGGCTTTGCTATTGATTTTCTAATGGGTGGCGTTTCTGCTGCTGTGTCCAAGACTGCTGCTGCTCCAATTGAGCGTGTAAAGCTCTTGATTCAAAATCAGGATGAGATGATCAAAGCCGGTAGGCTCTCTGAACCCTACAAGGGAATTGGAGATTGTTTTAGCCGAACAATGAAAGATGAGGGGATGGTATCATTGTGGCGAGGAAACACGGCAAATGTCATCCGTTACTTCCCAACTCAGGCCTTAAACTTTGCGTTTAAAGATTACTTCAAGAGGTTGTTCAATTTCAGAAAGGACAAGGATGGCTACTGGAAATGGTTTGCAGGTAACTTGGCATCCGGTGGTGCTGCTGGTGCCTCTTCTTTATTCTTTGTCTACTCTTTGGATTATGCTCGTACCCGTCTTGCAAACGATTCCAAGGCCGCAAAGAAGGGAGGAGAGAGGCAATTCAATGGCCTGGTTGATGTCTACAAAAAGACTCTCAAGTCAGATGGTGTTGCCGGCCTTTACCGCGGCTTCAACATTTCTTGTGTTGGAATCATTGTGTACCGTGGTCTGTACTTTGGAATGTATGATTCTTTGAAGCCTGTGATCCTCACTGGAAAGTTGCAGGATAGTTTCTTTGCTAGCTTTGGTCTTGGTTGGGTTATAACCAACGGCGCCGGACTTGCATCTTACCCAATTGACACTGTCCGTAGAAGGATGATGATGACATCCGGTGAAGCCGTCAAGTACAAGAGCTCGCTTGACGCTTTCTCTCAAATCCTTAAGAATGAGGGTGCGAAGTCTCTCTTCAAGGGTGCCGGTGCCAACATTCTTCGTGCAGTTGCTGGTGCCGGGGTGCTTGCAGGTTACGACAAGCTTCAGGAGATCGTGTTCGGAAAGAAGTATGGGTTCTGGTGGAGCTTAAGTTCATATGAACCTACAACTCCACCCCCATATAGCTACAGATATTTGATTTGGAACTAA

Protein Analysis

404

Amino Acids

44.62

Weight (kDa)

9.77

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 83 - 177 3.3e-25 Mitochondrial carrier protein
Mito_carr PF00153 186 - 280 4.3e-21 Mitochondrial carrier protein
Mito_carr PF00153 286 - 376 2.1e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AasI GACNNNNNNGTC 1 cut(s) 727
Acc36I ACCTGC 2 cut(s) 557, 1082
AccB1I GGYRCC 7 cut(s) 12, 197, 596, 902, 1043, 1049, 1076
AccI GTMKAC 2 cut(s) 618, 711
AccII CGCG 1 cut(s) 756
AciI CCGC 4 cut(s) 88, 666, 754, 756
AclWI GGATC 2 cut(s) 173, 829
AcuI CTGAAG 2 cut(s) 177, 1091
AcyI GRCGYC 2 cut(s) 13, 903
AfaI GTAC 4 cut(s) 640, 791, 803, 977
AfiI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
AflII CTTAAG 2 cut(s) 1010, 1150
AgsI TTSAA 8 cut(s) 132, 335, 514, 526, 694, 763, 826, 1039
AjnI CCWGG 1 cut(s) 699
AloI GAACNNNNNNTCC 4 cut(s) 1103, 1135, 1138, 1170
AluBI AGCT 8 cut(s) 52, 173, 325, 873, 984, 1105, 1149, 1188
AluI AGCT 8 cut(s) 52, 173, 325, 873, 984, 1105, 1149, 1188
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 1 cut(s) 1035
AlwI GGATC 2 cut(s) 173, 829
AlwNI CAGNNNCTG 1 cut(s) 1073
AoxI GGCC 6 cut(s) 78, 89, 483, 663, 697, 745
ApeKI GCWGC 4 cut(s) 281, 299, 302, 590
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 2 cut(s) 15, 905
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 1081
AsuHPI GGTGA 1 cut(s) 974
AsuNHI GCTAGC 1 cut(s) 869
BanI GGYRCC 7 cut(s) 12, 197, 596, 902, 1043, 1049, 1076
BanII GRGCYC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 986
BbvI GCAGC 4 cut(s) 268, 286, 289, 577
BccI CCATC 4 cut(s) 89, 421, 539, 728
BceAI ACGGC 3 cut(s) 468, 916, 953
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 1081
BcoDI GTCTC 1 cut(s) 1035
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 1189
BfoI RGCGCY 2 cut(s) 16, 906
BfrI CTTAAG 2 cut(s) 1010, 1150
BfuAI ACCTGC 2 cut(s) 557, 1082
BisI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
BlsI GCNGC 7 cut(s) 90, 283, 301, 304, 592, 667, 758
Bme1390I CCNGG 2 cut(s) 701, 1081
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 8 cut(s) 14, 79, 199, 598, 904, 1045, 1051, 1078
BmrFI CCNGG 2 cut(s) 701, 1081
BmsI GCATC 2 cut(s) 587, 923
BmtI GCTAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 1081
BsaHI GRCGYC 2 cut(s) 13, 903
BsaJI CCNNGG 4 cut(s) 660, 754, 793, 1080
BsaWI WCCGGW 2 cut(s) 581, 959
BsaXI ACNNNNNCTCC 4 cut(s) 1103, 1133, 1138, 1168
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
Bse118I RCCGGY 3 cut(s) 359, 743, 1046
Bse1I ACTGG 2 cut(s) 557, 847
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 4 cut(s) 660, 754, 793, 1080
BseGI GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 951, 956
BseLI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
BseMII CTCAG 2 cut(s) 50, 494
BseNI ACTGG 2 cut(s) 557, 847
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 4 cut(s) 268, 286, 289, 577
BsgI GTGCAG 1 cut(s) 1086
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BshNI GGYRCC 7 cut(s) 12, 197, 596, 902, 1043, 1049, 1076
BsiHKAI GWGCWC 1 cut(s) 986
BsiSI CCGG 7 cut(s) 360, 582, 744, 906, 960, 1047, 1080
BslI CCNNNNNNNGG 4 cut(s) 76, 87, 383, 481
BsmAI GTCTC 1 cut(s) 1035
BsnI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
Bsp1286I GDGCHC 1 cut(s) 986
Bsp143I GATC 4 cut(s) 178, 351, 834, 1113
BspACI CCGC 4 cut(s) 88, 666, 754, 756
BspANI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BspCNI CTCAG 2 cut(s) 51, 493
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 8 cut(s) 14, 79, 199, 598, 904, 1045, 1051, 1078
BspMI ACCTGC 2 cut(s) 557, 1082
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 2 cut(s) 173, 829
BspT107I GGYRCC 7 cut(s) 12, 197, 596, 902, 1043, 1049, 1076
BspTI CTTAAG 2 cut(s) 1010, 1150
BsrFI RCCGGY 3 cut(s) 359, 743, 1046
BsrI ACTGG 2 cut(s) 557, 847
BssAI RCCGGY 3 cut(s) 359, 743, 1046
BssECI CCNNGG 4 cut(s) 660, 754, 793, 1080
BssMI GATC 4 cut(s) 178, 351, 834, 1113
BssNI GRCGYC 2 cut(s) 13, 903
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 2 cut(s) 794, 934
Bst6I CTCTTC 2 cut(s) 607, 1040
BstACI GRCGYC 2 cut(s) 13, 903
BstAFI CTTAAG 2 cut(s) 1010, 1150
BstC8I GCNNGC 5 cut(s) 17, 745, 871, 986, 1089
BstDEI CTNAG 2 cut(s) 59, 480
BstDSI CCRYGG 2 cut(s) 754, 793
BstF5I GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 951, 956
BstFNI CGCG 1 cut(s) 756
BstH2I RGCGCY 2 cut(s) 16, 906
BstHHI GCGC 2 cut(s) 15, 905
BstKTI GATC 4 cut(s) 181, 354, 837, 1116
BstMAI GTCTC 1 cut(s) 1035
BstMBI GATC 4 cut(s) 178, 351, 834, 1113
BstMWI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 911
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 699, 1079
BstSFI CTRYAG 1 cut(s) 1189
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 4 cut(s) 268, 286, 289, 577
BsuRI GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
BtgI CCRYGG 2 cut(s) 754, 793
BtsCI GGATG 8 cut(s) 81, 349, 432, 462, 550, 578, 951, 956
BtsIMutI CAGTG 2 cut(s) 840, 930
BveI ACCTGC 2 cut(s) 557, 1082
Cac8I GCNNGC 5 cut(s) 17, 745, 871, 986, 1089
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 2 cut(s) 15, 905
Cfr10I RCCGGY 3 cut(s) 359, 743, 1046
Cfr13I GGNCC 1 cut(s) 78
Cfr42I CCGCGG 1 cut(s) 757
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 4 cut(s) 639, 790, 802, 976
CviAII CATG 2 cut(s) 154, 165
CviQI GTAC 4 cut(s) 639, 790, 802, 976
DdeI CTNAG 2 cut(s) 59, 480
DinI GGCGCC 2 cut(s) 14, 904
DpnI GATC 4 cut(s) 180, 353, 836, 1115
DpnII GATC 4 cut(s) 178, 351, 834, 1113
DraI TTTAAA 1 cut(s) 502
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 607, 1040
EarI CTCTTC 2 cut(s) 607, 1040
Ecl136II GAGCTC 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 986
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 2 cut(s) 177, 1091
EcoICRI GAGCTC 1 cut(s) 984
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 986
EgeI GGCGCC 2 cut(s) 14, 904
EheI GGCGCC 2 cut(s) 14, 904
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 2 cut(s) 157, 168
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FatI CATG 2 cut(s) 153, 164
FauNDI CATATG 2 cut(s) 118, 1159
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 2 cut(s) 618, 711
Fnu4HI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
FokI GGATG 8 cut(s) 68, 356, 439, 449, 557, 565, 943, 958
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
FspBI CTAG 1 cut(s) 870
GlaI GCGC 2 cut(s) 14, 904
GluI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
HaeII RGCGCY 2 cut(s) 16, 906
HaeIII GGCC 6 cut(s) 80, 91, 485, 665, 699, 747
HapII CCGG 7 cut(s) 360, 582, 744, 906, 960, 1047, 1080
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 2 cut(s) 15, 905
Hin1I GRCGYC 2 cut(s) 13, 903
Hin1II CATG 2 cut(s) 157, 168
Hin6I GCGC 2 cut(s) 13, 903
HinP1I GCGC 2 cut(s) 13, 903
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 5 cut(s) 331, 656, 721, 780, 818
HpaII CCGG 7 cut(s) 360, 582, 744, 906, 960, 1047, 1080
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 3 cut(s) 619, 712, 790
Hpy188I TCNGA 5 cut(s) 60, 373, 533, 733, 1124
Hpy188III TCNNGA 4 cut(s) 328, 341, 514, 1109
Hpy8I GTNNAC 3 cut(s) 619, 712, 790
HpyAV CCTTC 3 cut(s) 102, 667, 936
HpyCH4III ACNGT 2 cut(s) 794, 934
HpyCH4V TGCA 8 cut(s) 137, 145, 566, 650, 853, 914, 1067, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 911
HpyF3I CTNAG 2 cut(s) 59, 480
Hsp92I GRCGYC 2 cut(s) 13, 903
Hsp92II CATG 2 cut(s) 157, 168
HspAI GCGC 2 cut(s) 13, 903
KasI GGCGCC 2 cut(s) 12, 902
KroI GCCGGC 1 cut(s) 743
KroNI GCCGGC 1 cut(s) 745
Ksp22I TGATCA 1 cut(s) 351
KspI CCGCGG 1 cut(s) 757
Kzo9I GATC 4 cut(s) 178, 351, 834, 1113
LmnI GCTCC 2 cut(s) 310, 1146
Lsp1109I GCAGC 4 cut(s) 268, 286, 289, 577
LweI GCATC 2 cut(s) 587, 923
MaeI CTAG 1 cut(s) 870
MaeIII GTNAC 3 cut(s) 467, 569, 1094
MalI GATC 4 cut(s) 180, 353, 836, 1115
MboI GATC 4 cut(s) 178, 351, 834, 1113
MboII GAAGA 3 cut(s) 594, 1027, 1052
MfeI CAATTG 2 cut(s) 309, 924
MhlI GDGCHC 1 cut(s) 986
MluCI AATT 5 cut(s) 309, 387, 526, 689, 924
Mly113I GGCGCC 2 cut(s) 13, 903
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 8 cut(s) 415, 437, 510, 610, 671, 678, 848, 1012
MroNI GCCGGC 1 cut(s) 743
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 4 cut(s) 488, 501, 1011, 1151
MspA1I CMGCKG 2 cut(s) 88, 756
MspCI CTTAAG 2 cut(s) 1010, 1150
MspI CCGG 7 cut(s) 360, 582, 744, 906, 960, 1047, 1080
MspR9I CCNGG 2 cut(s) 701, 1081
MunI CAATTG 2 cut(s) 309, 924
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 6 cut(s) 170, 197, 322, 596, 753, 911
NaeI GCCGGC 1 cut(s) 745
NarI GGCGCC 2 cut(s) 13, 903
NciI CCSGG 1 cut(s) 1081
NdeI CATATG 2 cut(s) 118, 1159
NdeII GATC 4 cut(s) 178, 351, 834, 1113
NgoMIV GCCGGC 1 cut(s) 743
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 157, 168
NlaIV GGNNCC 8 cut(s) 14, 79, 199, 598, 904, 1045, 1051, 1078
NspI RCATGY 1 cut(s) 168
PceI AGGCCT 1 cut(s) 485
PdiI GCCGGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 4 cut(s) 331, 656, 780, 818
PflFI GACNNNGTC 1 cut(s) 932
PkrI GCNGC 7 cut(s) 90, 283, 301, 304, 592, 667, 758
PleI GAGTC 1 cut(s) 715
PluTI GGCGCC 2 cut(s) 16, 906
PpsI GAGTC 1 cut(s) 715
PsiI TTATAA 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 8 cut(s) 14, 79, 199, 598, 904, 1045, 1051, 1078
PspPI GGNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 1073
PsyI GACNNNGTC 1 cut(s) 932
RsaI GTAC 4 cut(s) 640, 791, 803, 977
RsaNI GTAC 4 cut(s) 639, 790, 802, 976
SacI GAGCTC 1 cut(s) 986
SacII CCGCGG 1 cut(s) 757
SaqAI TTAA 4 cut(s) 488, 501, 1011, 1151
SatI GCNGC 7 cut(s) 89, 282, 300, 303, 591, 666, 757
Sau3AI GATC 4 cut(s) 178, 351, 834, 1113
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 701, 1081
SduI GDGCHC 1 cut(s) 986
SfaNI GCATC 2 cut(s) 587, 923
SfcI CTRYAG 1 cut(s) 1189
SfoI GGCGCC 2 cut(s) 14, 904
Sfr303I CCGCGG 1 cut(s) 757
SgrBI CCGCGG 1 cut(s) 757
SmlI CTYRAG 3 cut(s) 725, 1010, 1150
SmoI CTYRAG 3 cut(s) 725, 1010, 1150
Sse9I AATT 5 cut(s) 309, 387, 526, 689, 924
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 4 cut(s) 88, 666, 754, 756
SspDI GGCGCC 2 cut(s) 12, 902
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 986
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 699, 1079
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 2 cut(s) 794, 934
TaqI TCGA 1 cut(s) 169
TasI AATT 5 cut(s) 309, 387, 526, 689, 924
TatI WGTACW 2 cut(s) 801, 975
TauI GCSGC 3 cut(s) 91, 668, 759
TfiI GAWTC 4 cut(s) 331, 656, 780, 818
Tru1I TTAA 4 cut(s) 488, 501, 1011, 1151
Tru9I TTAA 4 cut(s) 488, 501, 1011, 1151
TscAI CASTG 2 cut(s) 847, 937
TseI GCWGC 4 cut(s) 281, 299, 302, 590
TspDTI ATGAA 6 cut(s) 44, 105, 170, 428, 1146, 1176
TspGWI ACGGA 5 cut(s) 47, 85, 171, 455, 926
TspRI CASTG 2 cut(s) 847, 937
Tth111I GACNNNGTC 1 cut(s) 932
Vha464I CTTAAG 2 cut(s) 1010, 1150
XceI RCATGY 1 cut(s) 168
XmiI GTMKAC 2 cut(s) 618, 711
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.