Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002592

Physical Location & Seq

Genomic Coordinates Forward (+)

3423893 .. 3424566

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACCAAGAGAACGAAGAAGGCTAGAATTGTCGGAAAATATGGTACACGATATGGTGCCAGTCTTAGGAAGCAGATCAAGAAGATGGAAGTGAGTCAACACAACAAGTACTTCTGTGAGTTCTGCGGAAAGTACTCCGTTAAGAGGAAAGTTGTTGGCATTTGGGGGTGCAAAGATTGCGGGAAAGTGAAAGCAGGCGGTGCATACACAATGAACACGGCTAGTGCTGTGACTGTTAGGAGTACCATCAGGCGGTTGAGAGAGCAAACCGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37ae

Protein Analysis

92

Amino Acids

10.45

Weight (kDa)

10.33

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37ae	PF01780	4 - 88	1.1e-38	Ribosomal L37ae protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10950 AT3G60245
fragaria_vesca	FvH4_5g20720 FvH4_5g33510 FvH4_7g09070
malus_domestica	MD02G1221600.v1.1 MD04G1053900.v1.1 MD06G1044600.v1.1 MD07G1094700.v1.1 MD13G1011900.v1.1
prunus_persica	Prupe.2G119100_v2.0.a1 Prupe.5G052800_v2.0.a1
pyrus_communis	pycom04g04700 pycom06g03790 pycom07g07800
rosa_chinensis	RchiOBHm_Chr1g0344921 RchiOBHm_Chr3g0477031 RchiOBHm_Chr7g0206491
rosa_laevigata	RLG00000003309 RLG00000003310
rosa_multiflora	Rmu_co8322135.1_g000001 Rmu_sc0000390.1_g000003 Rmu_sc0005065.1_g000043 Rmu_sc0037016.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251480 Rroxscaffold_4G00309520
rosa_rugosa	Rorug01G0175000 Rorug07G0097900
rosa_samantha	Rh1AG193000 Rh1BG159300 Rh1CG178100 Rh1DG190100 Rh3BG241600 Rh7AG229500 Rh7BG226100 Rh7CG244300 Rh7DG236500
rosa_wichuraiana	Rw1G015880 Rw7G019750 Rw7G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	4 cut(s)	126, 180, 198, 253
AfaI	GTAC	4 cut(s)	46, 110, 134, 244
AfiI	CCNNNNNNNGG	3 cut(s)	66, 144, 252
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	56
BccI	CCATC	2 cut(s)	79, 254
BceAI	ACGGC	1 cut(s)	234
BfaI	CTAG	3 cut(s)	24, 222, 277
BmcAI	AGTACT	2 cut(s)	110, 134
BmiI	GGNNCC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 144, 252
Bse1I	ACTGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	66, 144, 252
BseNI	ACTGG	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	66, 144, 252
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	126, 180, 198, 253
BspLI	GGNNCC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	2 cut(s)	177, 200
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 200
Cac8I	GCNNGC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	45, 109, 133, 243
CviJI	RGCY	3 cut(s)	23, 221, 276
CviKI_1	RGCY	3 cut(s)	23, 221, 276
CviQI	GTAC	4 cut(s)	45, 109, 133, 243
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
FaiI	YATR	3 cut(s)	42, 54, 205
FauI	CCCGC	1 cut(s)	173
FspBI	CTAG	3 cut(s)	24, 222, 277
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	47, 98
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	47, 98
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	171, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 200
HpyF3I	CTNAG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	3 cut(s)	73, 180, 235
MaeI	CTAG	3 cut(s)	24, 222, 277
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	28, 94
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	177, 200
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	58
RsaI	GTAC	4 cut(s)	46, 110, 134, 244
RsaNI	GTAC	4 cut(s)	45, 109, 133, 243
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	75
ScaI	AGTACT	2 cut(s)	110, 134
SchI	GAGTC	1 cut(s)	103
SetI	ASST	1 cut(s)	278
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	126, 180, 198, 253
SspMI	CTAG	3 cut(s)	24, 222, 277
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	108, 132
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	127
XspI	CTAG	3 cut(s)	24, 222, 277
ZrmI	AGTACT	2 cut(s)	110, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.