Rw7G019750

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002592
Physical Location & Seq
Reverse (-)
21963726 .. 21965178
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019750.1

Sequence Viewer

Length: 279 bp
ATGACTAAGAGAACGAAGAAGGCTGGAATCGTTGGGAAATATGGTACCCGTTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAGTATTTCTGTGAATTCTGCGGCAAGTATGCTGTGAAGAGGAAGGCTGTTGGCATCTGGGGATGCAAGGACTGTGGCAAAGTGAAGGCTGGTGGTGCCTATACTTTGAACACTGCTGCTGCTGTTACAGTTAGAAGCACCATCAGGAGGCTGAGGGAGCAAACTGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.9e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 3 cut(s) 44, 56, 200
AciI CCGC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 221, 224
ApoI RAATTY 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 44
BanI GGYRCC 3 cut(s) 44, 56, 200
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 208, 211
BccI CCATC 2 cut(s) 79, 254
BisI GCNGC 3 cut(s) 127, 222, 225
BlsI GCNGC 3 cut(s) 128, 223, 226
BmiI GGNNCC 3 cut(s) 46, 58, 202
BmsI GCATC 2 cut(s) 158, 168
Bpu10I CCTNAGC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 248, 261
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 208, 211
BshNI GGYRCC 3 cut(s) 44, 56, 200
BslI CCNNNNNNNGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 249, 262
BspLI GGNNCC 3 cut(s) 46, 58, 202
BspT107I GGYRCC 3 cut(s) 44, 56, 200
BsrI ACTGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 179, 235
Bst6I CTCTTC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 6, 257, 270
BstF5I GGATG 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 200, 262
BstV1I GCAGC 2 cut(s) 208, 211
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Csp6I GTAC 1 cut(s) 45
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 4 cut(s) 23, 152, 194, 256
CviKI_1 RGCY 4 cut(s) 23, 152, 194, 256
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 3 cut(s) 6, 257, 270
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 119
FaiI YATR 4 cut(s) 42, 54, 135, 207
Fnu4HI GCNGC 3 cut(s) 127, 222, 225
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 127, 222, 225
GluI GCNGC 3 cut(s) 127, 222, 225
HinfI GANTC 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 13, 142, 184
HpyCH4III ACNGT 2 cut(s) 179, 235
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 262
HpyF3I CTNAG 3 cut(s) 6, 257, 270
KpnI GGTACC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 9, 73, 148, 180, 235
Lsp1109I GCAGC 2 cut(s) 208, 211
LweI GCATC 2 cut(s) 158, 168
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 3 cut(s) 28, 94, 154
MluCI AATT 1 cut(s) 119
MnlI CCTC 3 cut(s) 138, 246, 252
MseI TTAA 2 cut(s) 78, 277
MwoI GCNNNNNNNGC 2 cut(s) 200, 262
NlaIV GGNNCC 3 cut(s) 46, 58, 202
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 128, 223, 226
PspN4I GGNNCC 3 cut(s) 46, 58, 202
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 78, 277
SatI GCNGC 3 cut(s) 127, 222, 225
SfaNI GCATC 2 cut(s) 158, 168
SgeI CNNG 9 cut(s) 36, 60, 72, 118, 142, 175, 184, 207, 262
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 126
TaaI ACNGT 2 cut(s) 179, 235
TasI AATT 1 cut(s) 119
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 78, 277
Tru9I TTAA 2 cut(s) 78, 277
TscAI CASTG 1 cut(s) 223
TseI GCWGC 2 cut(s) 221, 224
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.