MD07G1094700.v1.1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002592
Physical Location & Seq
Forward (+)
10155665 .. 10157785
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1094700.v1.1.491

Sequence Viewer

Length: 279 bp
ATGACTAAGAGAACCAAGAAGGCGGGTATTGTTGGGAAGTACGGCACCCGATATGGTGCTAGTCTGAGGAAGCAAATCAAGAAGATGGAAGTCTCTCAGCACAGCAAGTACTTTTGTGAGTTCTGTGGGAAGTACGCGGTGAAGCGTAAGGCTGTTGGAATTTGGGGTTGCAAAGATTGTGGCAAAGTGAAAGCTGGAGGCGCCTACACACTGAATACTGCTAGTGCTGTGACCGTTAGGAGCACCATCCGAAGGCTGAGGGAGCAGACCGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

93

Amino Acids

10.26

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.6e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 200
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 23, 137
AcsI RAATTY 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 3 cut(s) 41, 110, 134
AfiI CCNNNNNNNGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 151
BanI GGYRCC 2 cut(s) 44, 200
Bbv12I GWGCWC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 79, 254
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 60, 222
BfoI RGCGCY 1 cut(s) 204
BmcAI AGTACT 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 46, 202
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 56, 110, 248
Bsh1236I CGCG 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 44, 200
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 2 cut(s) 23, 137
BspCNI CTCAG 3 cut(s) 57, 109, 249
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 46, 202
BspT107I GGYRCC 2 cut(s) 44, 200
BssNI GRCGYC 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 6, 65, 96, 257
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 200, 262
BstUI CGCG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 40, 109, 133
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 3 cut(s) 152, 194, 256
CviKI_1 RGCY 3 cut(s) 152, 194, 256
CviQI GTAC 3 cut(s) 40, 109, 133
DdeI CTNAG 4 cut(s) 6, 65, 96, 257
DinI GGCGCC 1 cut(s) 202
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
FaiI YATR 1 cut(s) 54
FauI CCCGC 1 cut(s) 16
FokI GGATG 1 cut(s) 233
FspBI CTAG 2 cut(s) 60, 222
GlaI GCGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 204
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 66, 251
Hpy188III TCNNGA 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 13, 246
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 262
HpyF3I CTNAG 4 cut(s) 6, 65, 96, 257
Hsp92I GRCGYC 1 cut(s) 201
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 240, 262
LpnPI CCDG 1 cut(s) 180
MaeI CTAG 2 cut(s) 60, 222
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 60, 191, 252
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 200, 262
NarI GGCGCC 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 46, 202
NmuCI GTSAC 1 cut(s) 229
PluTI GGCGCC 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 46, 202
RsaI GTAC 3 cut(s) 41, 110, 134
RsaNI GTAC 3 cut(s) 40, 109, 133
ScaI AGTACT 1 cut(s) 110
SduI GDGCHC 1 cut(s) 245
SetI ASST 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 202
SgeI CNNG 9 cut(s) 28, 36, 60, 72, 91, 118, 148, 207, 234
Sse9I AATT 1 cut(s) 159
SsiI CCGC 2 cut(s) 23, 137
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 2 cut(s) 60, 222
TaaI ACNGT 1 cut(s) 235
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 108
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 159
XspI CTAG 2 cut(s) 60, 222
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.