AT3G60245

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002592
Physical Location & Seq
Forward (+)
22268688 .. 22270028
1341 bp
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UTR
Exon/CDS
Intron
AT3G60245.1

Sequence Viewer

Length: 279 bp
ATGGCGAAGAGAACGAAGAAGGTTGGAATCGTCGGCAAATACGGAACACGTTATGGTGCGAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGCCAGCACAGCAAGTACTTCTGTGAGTTCTGTGGCAAGTACGGAGTGAAGCGAAAGGCTGTTGGTATCTGGGGTTGCAAGGATTGTGGCAAGGTCAAGGCAGGTGGTGCTTACACAATGAACACCGCCAGTGCGGTCACTGTTAGAAGCACGATCAGAAGGTTGAGGGAGCAGATCGAGGGTTAA

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

10.24

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.9e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AciI CCGC 2 cut(s) 219, 227
AfaI GTAC 2 cut(s) 110, 134
AflIII ACRYGT 1 cut(s) 47
BccI CCATC 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 185
BmcAI AGTACT 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 222
Bsp143I GATC 2 cut(s) 246, 267
BspACI CCGC 2 cut(s) 219, 227
BspMI ACCTGC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 222
BssMI GATC 2 cut(s) 246, 267
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 249, 270
BstMBI GATC 2 cut(s) 246, 267
BstMWI GCNNNNNNNGC 2 cut(s) 102, 200
BtsIMutI CAGTG 2 cut(s) 229, 231
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 109, 133
CspCI CAANNNNNGTGG 4 cut(s) 160, 178, 195, 213
CviJI RGCY 2 cut(s) 96, 152
CviKI_1 RGCY 2 cut(s) 96, 152
CviQI GTAC 2 cut(s) 109, 133
DpnI GATC 2 cut(s) 248, 269
DpnII GATC 2 cut(s) 246, 267
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
FaiI YATR 1 cut(s) 54
HinfI GANTC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 13, 246
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 200
HpySE526I ACGT 1 cut(s) 49
Kzo9I GATC 2 cut(s) 246, 267
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 52, 110, 148, 180, 235
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 248, 269
MboI GATC 2 cut(s) 246, 267
MboII GAAGA 3 cut(s) 19, 28, 94
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 3 cut(s) 82, 252, 265
MseI TTAA 2 cut(s) 78, 277
MwoI GCNNNNNNNGC 2 cut(s) 102, 200
NdeII GATC 2 cut(s) 246, 267
NmuCI GTSAC 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 27
RsaI GTAC 2 cut(s) 110, 134
RsaNI GTAC 2 cut(s) 109, 133
SaqAI TTAA 2 cut(s) 78, 277
Sau3AI GATC 2 cut(s) 246, 267
ScaI AGTACT 1 cut(s) 110
SetI ASST 6 cut(s) 24, 52, 93, 189, 199, 257
SsiI CCGC 2 cut(s) 219, 227
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 270
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 78, 277
Tru9I TTAA 2 cut(s) 78, 277
TscAI CASTG 2 cut(s) 229, 238
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 57, 150
TspRI CASTG 2 cut(s) 229, 238
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.