RLG00000003310

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002592
Physical Location & Seq
Forward (+)
46979718 .. 46980936
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003310

Sequence Viewer

Length: 351 bp
ATGCTCTATAAAAGCGAAGAGAGCAAGTTAGGGTTTCTCCTATTGCTCAGAGAAGTCAGTAGCAGCCGCTTCTCCACTTTCAGAGCCAGCGACCTTCTCCTATCCCCAAACCATGGTACCCGTTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAGTATTTCTGTGAATTCTGTGGCAAGTATGCTGTGAAGAGGAAGGCTGTTGGCATTTGGGGATGCAAGGACTGTGGCAAAGTGAAGGCTGGTGGTGCCTATACTTTGAACACTGCTGCAGCCGTTACAGTTAGAAGCACCATCAGGAGGCTGAGGGAGCAAACTGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

9.98

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 38 - 112 5.2e-35 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 3 cut(s) 116, 128, 272
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 113, 324
AgsI TTSAA 1 cut(s) 286
ApeKI GCWGC 3 cut(s) 63, 293, 296
ApoI RAATTY 1 cut(s) 191
Asp718I GGTACC 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BanI GGYRCC 3 cut(s) 116, 128, 272
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 75, 280, 308
BccI CCATC 2 cut(s) 151, 326
BceAI ACGGC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 4 cut(s) 64, 67, 294, 297
BlsI GCNGC 4 cut(s) 65, 68, 295, 298
BmiI GGNNCC 3 cut(s) 118, 130, 274
BmsI GCATC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 324
Bse1I ACTGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 113, 324
BseMII CTCAG 3 cut(s) 61, 320, 333
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 75, 280, 308
BshNI GGYRCC 3 cut(s) 116, 128, 272
BslI CCNNNNNNNGG 2 cut(s) 113, 324
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 60, 321, 334
BspLI GGNNCC 3 cut(s) 118, 130, 274
BspMAI CTGCAG 1 cut(s) 298
BspT107I GGYRCC 3 cut(s) 116, 128, 272
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 251, 307
Bst6I CTCTTC 2 cut(s) 12, 209
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 47, 329, 342
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 245
BstMWI GCNNNNNNNGC 3 cut(s) 21, 272, 334
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 75, 280, 308
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 117
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 1 cut(s) 113
CviJI RGCY 6 cut(s) 66, 86, 224, 266, 299, 328
CviKI_1 RGCY 6 cut(s) 66, 86, 224, 266, 299, 328
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 3 cut(s) 47, 329, 342
Eam1104I CTCTTC 2 cut(s) 12, 209
EarI CTCTTC 2 cut(s) 12, 209
Eco130I CCWWGG 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 1 cut(s) 116
FaiI YATR 5 cut(s) 9, 114, 126, 207, 279
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 64, 67, 294, 297
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 4 cut(s) 64, 67, 294, 297
GluI GCNGC 4 cut(s) 64, 67, 294, 297
Hin1II CATG 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 50, 83
Hpy188III TCNNGA 1 cut(s) 322
HpyAV CCTTC 3 cut(s) 104, 214, 256
HpyCH4III ACNGT 2 cut(s) 251, 307
HpyCH4V TGCA 2 cut(s) 243, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 272, 334
HpyF3I CTNAG 3 cut(s) 47, 329, 342
Hsp92II CATG 1 cut(s) 116
KpnI GGTACC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 100, 145, 252, 307
Lsp1109I GCAGC 3 cut(s) 75, 280, 308
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 301
MboII GAAGA 3 cut(s) 29, 166, 226
MluCI AATT 1 cut(s) 191
MnlI CCTC 4 cut(s) 154, 210, 318, 324
MseI TTAA 2 cut(s) 150, 349
MwoI GCNNNNNNNGC 3 cut(s) 21, 272, 334
NcoI CCATGG 1 cut(s) 112
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 118, 130, 274
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 4 cut(s) 65, 68, 295, 298
PspN4I GGNNCC 3 cut(s) 118, 130, 274
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 150, 349
SatI GCNGC 4 cut(s) 64, 67, 294, 297
SetI ASST 2 cut(s) 96, 165
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 294
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 67
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 251, 307
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 150, 349
Tru9I TTAA 2 cut(s) 150, 349
TscAI CASTG 1 cut(s) 295
TseI GCWGC 3 cut(s) 63, 293, 296
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.