FvH4_5g33510

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002592
Physical Location & Seq
Forward (+)
24226413 .. 24226799
387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33510.t1

Sequence Viewer

Length: 216 bp
ATGGTTACGCAGACTAGGAAGATGTATGTCAGTCAGCATAGCAAGTATTCATGTGGATTCTGTAGCAAGTTTTCTGTGAAGAGGAAGGCTGTTGGCATTGGGGGATGCAAGGACTGTGACAAAGTGAAGGCCGGTGGTGCCTACACCTTGAACACGGCTGCTGCTGTTATAGTTAGGAGCACAATCAGGAGGCTGAGGGAGCAAACCGAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

72

Amino Acids

7.82

Weight (kDa)

9.85

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 5 - 67 7.1e-22 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 182
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 158, 161
BanI GGYRCC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 145, 148
BceAI ACGGC 1 cut(s) 171
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 2 cut(s) 159, 162
BlsI GCNGC 2 cut(s) 160, 163
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 131
BseGI GGATG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 145, 148
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 132
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 182
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 137, 199
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 145, 148
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 131
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 89, 131, 158, 193
CviKI_1 RGCY 4 cut(s) 89, 131, 158, 193
DdeI CTNAG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 27, 39, 52, 170
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 159, 162
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 159, 162
FspBI CTAG 1 cut(s) 15
GluI GCNGC 2 cut(s) 159, 162
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 57
HpaII CCGG 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 79, 121
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 199
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 54
LmnI GCTCC 2 cut(s) 177, 199
LpnPI CCDG 2 cut(s) 145, 172
Lsp1109I GCAGC 2 cut(s) 145, 148
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 4, 116
MboII GAAGA 2 cut(s) 31, 91
MhlI GDGCHC 1 cut(s) 182
MnlI CCTC 3 cut(s) 75, 183, 189
MseI TTAA 1 cut(s) 214
MspI CCGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 137, 199
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 160, 163
PspN4I GGNNCC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 2 cut(s) 159, 162
SduI GDGCHC 1 cut(s) 182
SetI ASST 1 cut(s) 149
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 61
SgeI CNNG 9 cut(s) 27, 55, 63, 79, 121, 144, 160, 166, 199
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 116
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 158, 161
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 39
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.