FvH4_7g09070

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002592
Physical Location & Seq
Forward (+)
8814095 .. 8816003
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09070.t1

Sequence Viewer

Length: 279 bp
ATGACGAAGAGAACCAAGAAGGCTGGCATTGTCGGCAAGTATGGAACAAGATATGGTGCTAGTCTGAGAAAGCAGATTAAGAAGATGGAGATCAGTCAACATAGCAAGTACTTTTGTGAATTTTGTGGCAAGTATGCAGTGAAGAGAAAGGTTGTCGGAATCTGGGGTTGCAAGGACTGCGGCAAAGTAAAAGCTGGAGGTGCCTACACACTCAATACTGCAGCGGCTGTGACAGTCAGGAGCACTATCCGAAGGCTCAGGGAGCAGACTGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

93

Amino Acids

10.28

Weight (kDa)

10.24

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.8e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 2 cut(s) 180, 224
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 110
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 119
BanI GGYRCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 79
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 181, 222, 225
BlsI GCNGC 3 cut(s) 182, 223, 226
BmcAI AGTACT 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 89
BseMII CTCAG 3 cut(s) 56, 261, 271
BseXI GCAGC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 180, 224
BspCNI CTCAG 3 cut(s) 57, 262, 270
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 200
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 2, 137
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 65, 257, 270
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 33, 177, 200, 262
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 4 cut(s) 23, 194, 227, 256
CviKI_1 RGCY 4 cut(s) 23, 194, 227, 256
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 65, 257, 270
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 2, 137
EarI CTCTTC 2 cut(s) 2, 137
FaiI YATR 4 cut(s) 42, 54, 102, 135
Fnu4HI GCNGC 3 cut(s) 181, 222, 225
Fsp4HI GCNGC 3 cut(s) 181, 222, 225
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 181, 222, 225
GsuI CTGGAG 1 cut(s) 216
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 66, 158, 251
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 13, 246
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 137, 171, 221
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 177, 200, 262
HpyF3I CTNAG 3 cut(s) 65, 257, 270
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 240, 262
LpnPI CCDG 5 cut(s) 9, 148, 180, 223, 244
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 19, 94, 154
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 1 cut(s) 191
MseI TTAA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 224
MwoI GCNNNNNNNGC 4 cut(s) 33, 177, 200, 262
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 182, 223, 226
PspN4I GGNNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 3 cut(s) 181, 222, 225
Sau3AI GATC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 110
SduI GDGCHC 1 cut(s) 245
SetI ASST 3 cut(s) 153, 196, 202
SfcI CTRYAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 119
SsiI CCGC 2 cut(s) 180, 224
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 235
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 108
TauI GCSGC 2 cut(s) 183, 227
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.