FvH4_5g20720

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002592
Physical Location & Seq
Reverse (-)
12300743 .. 12302213
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20720.t1

Sequence Viewer

Length: 279 bp
ATGACTAAGAGAACGAAGAAGGCTGGAATCGTCGGGAAGTACGGTACCCGCTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAGTACTTCTGTGAATTTTGCGGAAAGTATGCTGTGAAGAGGAAGGCTGTTGGCATTTGGGGATGCAAGGACTGTGGCAAAGTGAAGGCCGGTGGTGCCTATACTTTGAACACTGCTGCTGCTGTCACAGTTAGGAGCACCATCAGGAGGCTGAGGGAGCAAACTGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

93

Amino Acids

10.24

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.9e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 3 cut(s) 44, 56, 200
AciI CCGC 2 cut(s) 49, 126
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 3 cut(s) 41, 46, 110
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 245
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 221, 224
ApoI RAATTY 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 44
BanI GGYRCC 3 cut(s) 44, 56, 200
Bbv12I GWGCWC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 208, 211
BccI CCATC 2 cut(s) 79, 254
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
BmcAI AGTACT 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 46, 58, 202
BmsI GCATC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 248, 261
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 208, 211
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 3 cut(s) 44, 56, 200
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 252
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 2 cut(s) 49, 126
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 249, 262
BspLI GGNNCC 3 cut(s) 46, 58, 202
BspT107I GGYRCC 3 cut(s) 44, 56, 200
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 44, 179, 235
Bst6I CTCTTC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 6, 257, 270
BstF5I GGATG 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 200, 262
BstV1I GCAGC 2 cut(s) 208, 211
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 3 cut(s) 40, 45, 109
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 4 cut(s) 23, 152, 194, 256
CviKI_1 RGCY 4 cut(s) 23, 152, 194, 256
CviQI GTAC 3 cut(s) 40, 45, 109
DdeI CTNAG 3 cut(s) 6, 257, 270
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
FaiI YATR 3 cut(s) 54, 135, 207
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 222, 225
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 222, 225
GluI GCNGC 2 cut(s) 222, 225
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 195
HinfI GANTC 1 cut(s) 27
HpaII CCGG 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 34, 250
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 13, 142, 184
HpyCH4III ACNGT 3 cut(s) 44, 179, 235
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 262
HpyF3I CTNAG 3 cut(s) 6, 257, 270
KpnI GGTACC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 240, 262
LpnPI CCDG 4 cut(s) 9, 73, 208, 235
Lsp1109I GCAGC 2 cut(s) 208, 211
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 3 cut(s) 28, 94, 154
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 119
MnlI CCTC 3 cut(s) 138, 246, 252
MseI TTAA 2 cut(s) 78, 277
MspI CCGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 200, 262
NlaIV GGNNCC 3 cut(s) 46, 58, 202
NmuCI GTSAC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 223, 226
PspN4I GGNNCC 3 cut(s) 46, 58, 202
RsaI GTAC 3 cut(s) 41, 46, 110
RsaNI GTAC 3 cut(s) 40, 45, 109
SaqAI TTAA 2 cut(s) 78, 277
SatI GCNGC 2 cut(s) 222, 225
ScaI AGTACT 1 cut(s) 110
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 158
SgeI CNNG 8 cut(s) 36, 46, 60, 72, 118, 184, 207, 262
Sse9I AATT 1 cut(s) 119
SsiI CCGC 2 cut(s) 49, 126
TaaI ACNGT 3 cut(s) 44, 179, 235
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 78, 277
Tru9I TTAA 2 cut(s) 78, 277
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 221, 224
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.