pycom04g04700

Ribosomal L37ae protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002592
Physical Location & Seq
Forward (+)
4350615 .. 4352026
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04700.3

Sequence Viewer

Length: 402 bp
ATGGACCCAGTTGGTATGACCCGTTTTAAAGTTGGCCCATTTGGTTTCTCTATTTGCTCTGAGAAGAAGAAAGTACCAGCCGCTTCAGCCCTTCACAGCCAGCAGACCCTCCAATCCACAACAATGACTAAGAGGACGAAGAAGGCCGGTATTGTTGGGAAATATGGAACTCGTTACGGTGCCAGTCTGCGTAAGCAGATTAAGAAAATGGAAGTTAGCCAGCACAGCAAGTATTTCTGTGAATTCTGTGGCAAGTATGCTGTGAAGAGAAAGGCCGTTGGAATTTGGGGATGCAAGGACTGCGGAAAAGTGAAGGCAGGCGGTGCCTATACTTTGAACACTGCTAGTGCTGTGACGGTTAGGAGCACCATTAGAAGGCTGAGGGAGCAAACCGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

134

Amino Acids

14.65

Weight (kDa)

10.2

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 323
AciI CCGC 3 cut(s) 81, 303, 321
AcsI RAATTY 2 cut(s) 242, 282
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 1 cut(s) 337
Alw21I GWGCWC 1 cut(s) 368
AoxI GGCC 3 cut(s) 34, 144, 273
ApoI RAATTY 2 cut(s) 242, 282
AspS9I GGNCC 2 cut(s) 4, 35
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 179, 323
Bbv12I GWGCWC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 260
BfaI CTAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 35
BmiI GGNNCC 3 cut(s) 6, 181, 325
BmsI GCATC 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 8, 183
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 51, 371
BseNI ACTGG 2 cut(s) 8, 183
BshFI GGCC 3 cut(s) 36, 146, 275
BshNI GGYRCC 2 cut(s) 179, 323
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 375
BsnI GGCC 3 cut(s) 36, 146, 275
Bsp1286I GDGCHC 1 cut(s) 368
BspACI CCGC 3 cut(s) 81, 303, 321
BspANI GGCC 3 cut(s) 36, 146, 275
BspCNI CTCAG 2 cut(s) 52, 372
BspLI GGNNCC 3 cut(s) 6, 181, 325
BspT107I GGYRCC 2 cut(s) 179, 323
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 8, 183
BssAI RCCGGY 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 179, 358
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 2 cut(s) 300, 323
BstC8I GCNNGC 3 cut(s) 101, 221, 319
BstDEI CTNAG 3 cut(s) 60, 129, 380
BstF5I GGATG 1 cut(s) 296
BstMWI GCNNNNNNNGC 5 cut(s) 86, 225, 300, 323, 385
BsuRI GGCC 3 cut(s) 36, 146, 275
BtsCI GGATG 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 101, 221, 319
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 4, 35
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 8 cut(s) 36, 80, 89, 99, 146, 219, 275, 379
CviKI_1 RGCY 8 cut(s) 36, 80, 89, 99, 146, 219, 275, 379
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 60, 129, 380
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 242
FaiI YATR 4 cut(s) 17, 165, 258, 330
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 3 cut(s) 36, 146, 275
HapII CCGG 1 cut(s) 147
HpaII CCGG 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 101, 136, 307, 369
HpyCH4III ACNGT 2 cut(s) 179, 358
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 225, 300, 323, 385
HpyF3I CTNAG 3 cut(s) 60, 129, 380
LmnI GCTCC 2 cut(s) 363, 385
LpnPI CCDG 7 cut(s) 21, 90, 113, 160, 196, 233, 303
LweI GCATC 1 cut(s) 281
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 173, 352
MboII GAAGA 4 cut(s) 76, 79, 151, 277
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 242, 282
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 3 cut(s) 119, 126, 375
MseI TTAA 3 cut(s) 27, 201, 400
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 86, 225, 300, 323, 385
NlaIV GGNNCC 3 cut(s) 6, 181, 325
NmuCI GTSAC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 6, 181, 325
PspPI GGNCC 2 cut(s) 4, 35
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 3 cut(s) 27, 201, 400
SatI GCNGC 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 4, 35
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 2 cut(s) 242, 282
SsiI CCGC 3 cut(s) 81, 303, 321
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 179, 358
TasI AATT 2 cut(s) 242, 282
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 27, 201, 400
Tru9I TTAA 3 cut(s) 27, 201, 400
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 242, 282
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.