MD02G1221600.v1.1

Ribosomal L37ae protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002592
Physical Location & Seq
Reverse (-)
25846176 .. 25847256
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1221600.v1.1.491

Sequence Viewer

Length: 315 bp
ATGAACACCTTTAGTGTTATCGTTGTAACGAAGAGAACCAAGAAGGCGGGTGTCGTTGGGAAGTACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATCAAGAAGATGGAAGTCTCTCAGCACAGCAAGTACTTTTGTGAGTTCTGTGGGAAGTACGCCATTAAGCGTAAGGCTGTTGGAATATGGGGCTGCGAAGACTGGCAAAGTGAAAGCCGGGGGCGCCTACACGCTGAAGTAAGGAGTTTCCGTACTTCTAGTGCAGTGACTGTTAGGAGCACCATCCGAAGGCTGAGGGAGCAGACTGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

105

Amino Acids

11.95

Weight (kDa)

10.41

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 12 - 100 1.9e-28 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 222
AciI CCGC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 4 cut(s) 65, 134, 158, 253
AfiI CCNNNNNNNGG 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 218
BanI GGYRCC 2 cut(s) 68, 222
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 103, 290
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 84, 258
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 70, 224
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 3 cut(s) 134, 284, 297
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 68, 222
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 281
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 133, 285, 298
BspLI GGNNCC 2 cut(s) 70, 224
BspT107I GGYRCC 2 cut(s) 68, 222
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 120, 293, 306
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 222, 298
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 225
Csp6I GTAC 4 cut(s) 64, 133, 157, 252
CviJI RGCY 4 cut(s) 176, 192, 216, 292
CviKI_1 RGCY 4 cut(s) 176, 192, 216, 292
CviQI GTAC 4 cut(s) 64, 133, 157, 252
DdeI CTNAG 3 cut(s) 120, 293, 306
DinI GGCGCC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
FaiI YATR 2 cut(s) 78, 187
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 2 cut(s) 84, 258
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 226
HapII CCGG 1 cut(s) 217
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HpaII CCGG 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 37, 282
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 298
HpyF3I CTNAG 3 cut(s) 120, 293, 306
Hsp92I GRCGYC 1 cut(s) 223
HspAI GCGC 1 cut(s) 223
KasI GGCGCC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 276, 298
LpnPI CCDG 2 cut(s) 187, 230
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 2 cut(s) 84, 258
MaeIII GTNAC 2 cut(s) 25, 265
MboII GAAGA 3 cut(s) 43, 118, 209
MhlI GDGCHC 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 2 cut(s) 84, 288
MseI TTAA 1 cut(s) 165
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 222, 298
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 70, 224
NmuCI GTSAC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 194
PluTI GGCGCC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 70, 224
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 4 cut(s) 65, 134, 158, 253
RsaNI GTAC 4 cut(s) 64, 133, 157, 252
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 281
SetI ASST 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 224
SsiI CCGC 1 cut(s) 47
SspDI GGCGCC 1 cut(s) 222
SspMI CTAG 2 cut(s) 84, 258
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 271
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 270
XspI CTAG 2 cut(s) 84, 258
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.