Rh1AG193000

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002592
Physical Location & Seq
Forward (+)
36827936 .. 36830114
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG193000.1

Sequence Viewer

Length: 225 bp
ATGTTTACGTGGGTTAAAAGTTGGTGGTACTTGTTTTACATCTATTCAGGAACCCGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAGTACTTCTGTGAATTTTGCGGCAAGTATGCGGTGAAGAGAAAGGCTGTTGGAATCTGGGGTTGCAAAGACTGCGCCAAAGTGAAAGCTGGAGGTGCCTACACACTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

74

Amino Acids

8.68

Weight (kDa)

9.82

Isoelectric Point (pI)

16.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 17 - 73 4.8e-26 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 132, 143
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 2 cut(s) 29, 116
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 206
BccI CCATC 1 cut(s) 85
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmcAI AGTACT 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 52, 208
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 206
BspACI CCGC 2 cut(s) 132, 143
BspLI GGNNCC 2 cut(s) 52, 208
BspT107I GGYRCC 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 9
BstHHI GCGC 1 cut(s) 188
BstMWI GCNNNNNNNGC 2 cut(s) 183, 206
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 28, 115
CviJI RGCY 2 cut(s) 158, 200
CviKI_1 RGCY 2 cut(s) 158, 200
CviQI GTAC 2 cut(s) 28, 115
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
FaiI YATR 2 cut(s) 60, 141
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 222
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 206
HpySE526I ACGT 1 cut(s) 8
HspAI GCGC 1 cut(s) 186
LpnPI CCDG 3 cut(s) 33, 154, 186
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 8
MboII GAAGA 2 cut(s) 100, 160
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 3 cut(s) 66, 88, 197
MseI TTAA 2 cut(s) 15, 84
MwoI GCNNNNNNNGC 2 cut(s) 183, 206
NlaIV GGNNCC 2 cut(s) 52, 208
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 52, 208
RsaI GTAC 2 cut(s) 29, 116
RsaNI GTAC 2 cut(s) 28, 115
SaqAI TTAA 2 cut(s) 15, 84
SatI GCNGC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 116
SetI ASST 4 cut(s) 11, 99, 202, 208
SgeI CNNG 9 cut(s) 21, 43, 60, 66, 78, 124, 148, 181, 213
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 125
SsiI CCGC 2 cut(s) 132, 143
SspMI CTAG 1 cut(s) 66
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 15, 84
Tru9I TTAA 2 cut(s) 15, 84
XapI RAATTY 1 cut(s) 125
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.