SNF2 domain-containing protein CLASSY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10950 AT3G60245 |
| fragaria_vesca | FvH4_5g20720 FvH4_5g33510 FvH4_7g09070 |
| malus_domestica | MD02G1221600.v1.1 MD04G1053900.v1.1 MD06G1044600.v1.1 MD07G1094700.v1.1 MD13G1011900.v1.1 |
| prunus_persica | Prupe.2G119100_v2.0.a1 Prupe.5G052800_v2.0.a1 |
| pyrus_communis | pycom04g04700 pycom06g03790 pycom07g07800 |
| rosa_chinensis | RchiOBHm_Chr1g0344921 RchiOBHm_Chr3g0477031 RchiOBHm_Chr7g0206491 |
| rosa_laevigata | RLG00000003309 RLG00000003310 |
| rosa_multiflora | Rmu_co8322135.1_g000001 Rmu_sc0000390.1_g000003 Rmu_sc0005065.1_g000043 Rmu_sc0037016.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00251480 Rroxscaffold_4G00309520 |
| rosa_rugosa | Rorug01G0175000 Rorug07G0097900 |
| rosa_samantha | Rh1AG193000 Rh1BG159300 Rh1CG178100 Rh1DG190100 Rh3BG241600 Rh7AG229500 Rh7BG226100 Rh7CG244300 Rh7DG236500 |
| rosa_wichuraiana | Rw1G015880 Rw7G019750 Rw7G019760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 218 |
| AgsI | TTSAA | 2 cut(s) | 21, 347 |
| AluBI | AGCT | 2 cut(s) | 245, 317 |
| AluI | AGCT | 2 cut(s) | 245, 317 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 320 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BfaI | CTAG | 1 cut(s) | 332 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BmiI | GGNNCC | 1 cut(s) | 385 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 218 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| Bse3DI | GCAATG | 1 cut(s) | 157 |
| BseGI | GGATG | 3 cut(s) | 49, 229, 286 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseMI | GCAATG | 1 cut(s) | 157 |
| BseMII | CTCAG | 1 cut(s) | 312 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspLI | GGNNCC | 1 cut(s) | 385 |
| BsrDI | GCAATG | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| Bst6I | CTCTTC | 3 cut(s) | 86, 267, 369 |
| BstDEI | CTNAG | 1 cut(s) | 321 |
| BstF5I | GGATG | 3 cut(s) | 49, 229, 286 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 418 |
| BtsCI | GGATG | 3 cut(s) | 49, 229, 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| CaiI | CAGNNNCTG | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| CviJI | RGCY | 4 cut(s) | 245, 259, 317, 412 |
| CviKI_1 | RGCY | 4 cut(s) | 245, 259, 317, 412 |
| DdeI | CTNAG | 1 cut(s) | 321 |
| Eam1104I | CTCTTC | 3 cut(s) | 86, 267, 369 |
| EarI | CTCTTC | 3 cut(s) | 86, 267, 369 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| EcoO109I | RGGNCCY | 1 cut(s) | 24 |
| FaiI | YATR | 8 cut(s) | 61, 63, 85, 87, 161, 183, 354, 429 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| FokI | GGATG | 3 cut(s) | 56, 236, 273 |
| FspBI | CTAG | 1 cut(s) | 332 |
| HinfI | GANTC | 5 cut(s) | 109, 163, 173, 227, 392 |
| Hpy188I | TCNGA | 2 cut(s) | 322, 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 36, 77 |
| HpyCH4V | TGCA | 2 cut(s) | 150, 302 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 418 |
| HpyF3I | CTNAG | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 250 |
| LpnPI | CCDG | 5 cut(s) | 90, 186, 312, 318, 386 |
| MaeI | CTAG | 1 cut(s) | 332 |
| MboII | GAAGA | 4 cut(s) | 103, 254, 359, 386 |
| MluCI | AATT | 1 cut(s) | 31 |
| MnlI | CCTC | 3 cut(s) | 222, 270, 300 |
| MseI | TTAA | 2 cut(s) | 30, 442 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 418 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NlaIV | GGNNCC | 1 cut(s) | 385 |
| PfeI | GAWTC | 5 cut(s) | 109, 163, 173, 227, 392 |
| PflFI | GACNNNGTC | 1 cut(s) | 359 |
| PpuMI | RGGWCCY | 1 cut(s) | 24 |
| Psp5II | RGGWCCY | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 1 cut(s) | 385 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| PspPPI | RGGWCCY | 1 cut(s) | 24 |
| PstNI | CAGNNNCTG | 1 cut(s) | 320 |
| PsyI | GACNNNGTC | 1 cut(s) | 359 |
| SaqAI | TTAA | 2 cut(s) | 30, 442 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| SetI | ASST | 6 cut(s) | 26, 214, 247, 319, 342, 409 |
| SinI | GGWCC | 1 cut(s) | 24 |
| Sse9I | AATT | 1 cut(s) | 31 |
| SspMI | CTAG | 1 cut(s) | 332 |
| TaqI | TCGA | 1 cut(s) | 176 |
| TasI | AATT | 1 cut(s) | 31 |
| TfiI | GAWTC | 5 cut(s) | 109, 163, 173, 227, 392 |
| Tru1I | TTAA | 2 cut(s) | 30, 442 |
| Tru9I | TTAA | 2 cut(s) | 30, 442 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TspDTI | ATGAA | 2 cut(s) | 240, 255 |
| TspGWI | ACGGA | 1 cut(s) | 204 |
| TspRI | CASTG | 1 cut(s) | 394 |
| Tth111I | GACNNNGTC | 1 cut(s) | 359 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 332 |