Rh1CG178100

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002592
Physical Location & Seq
Forward (+)
39327010 .. 39329188
2179 bp
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UTR
Exon/CDS
Intron
Rh1CG178100.1

Sequence Viewer

Length: 285 bp
ATGTTTACGTGGGTTAAAAGTTGGTGGTACTTGTTTTACATCTATTCAGGAACCCGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAGTACTTCTGTGAATTTTGCGGCAAGTATGCGGTGAAGAGAAAGGCTGTTGGAATCTGGGGTTGCAAAGACTGCGCCAAAGTGAAAGCTGGAGGTGCCTACACACTCAATACTGCAAGTGCCGTGACAGTTAGGAGCACCATCCGAAGGCTCAGGGAGCAGACTGAGAGTTGA

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

9.94

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 17 - 90 2.9e-33 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 132, 143
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 2 cut(s) 29, 116
AfiI CCNNNNNNNGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 2 cut(s) 85, 260
BceAI ACGGC 1 cut(s) 218
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmcAI AGTACT 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 52, 208
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 267, 277
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 251
BspACI CCGC 2 cut(s) 132, 143
BspCNI CTCAG 2 cut(s) 268, 276
BspLI GGNNCC 2 cut(s) 52, 208
BspT107I GGYRCC 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 263, 276
BstF5I GGATG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 188
BstMWI GCNNNNNNNGC 3 cut(s) 183, 206, 268
BtsCI GGATG 1 cut(s) 252
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 28, 115
CviJI RGCY 3 cut(s) 158, 200, 262
CviKI_1 RGCY 3 cut(s) 158, 200, 262
CviQI GTAC 2 cut(s) 28, 115
DdeI CTNAG 2 cut(s) 263, 276
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
FaiI YATR 2 cut(s) 60, 141
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 222
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 177, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 206, 268
HpyF3I CTNAG 2 cut(s) 263, 276
HpySE526I ACGT 1 cut(s) 8
HspAI GCGC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 246, 268
LpnPI CCDG 4 cut(s) 33, 154, 186, 250
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 100, 160
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 3 cut(s) 66, 88, 197
MseI TTAA 2 cut(s) 15, 84
MwoI GCNNNNNNNGC 3 cut(s) 183, 206, 268
NlaIV GGNNCC 2 cut(s) 52, 208
NmuCI GTSAC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 52, 208
RsaI GTAC 2 cut(s) 29, 116
RsaNI GTAC 2 cut(s) 28, 115
SaqAI TTAA 2 cut(s) 15, 84
SatI GCNGC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 116
SduI GDGCHC 1 cut(s) 251
SetI ASST 4 cut(s) 11, 99, 202, 208
Sse9I AATT 1 cut(s) 125
SsiI CCGC 2 cut(s) 132, 143
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 15, 84
Tru9I TTAA 2 cut(s) 15, 84
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
XapI RAATTY 1 cut(s) 125
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.