Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002592

Physical Location & Seq

Genomic Coordinates Forward (+)

23813897 .. 23828942

Gene Structure 15046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGACATGCTTTTGGGGTATGGTGGAAGGCGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTCTGGTCCATACAATTCAACATCGAACTTGTAGCAGCATTTTATGGGGCAGTGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGCTTTTCACTCGGCTTTTCATCCCTTGGCCACAGTAGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAACTGTACATTGGGAGTTTCTTACAACACCCTTCCCAGCTAAAATGAGTTCCATGACTACAATTCTTGTCATTTCAGTGTGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCCATCATCTCAATCCTTGCACTAAGGCAGGGCATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGCAAGTCCATTGGCATGGTACCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGCATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACACCCGAGAGGATTGGCCAAGATTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACGAGAAAAATCATTCTTCACAGCCCGAAGTCAAGGGTGCTTTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATGATCCTACAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAACTCGGAAGCATGGTCCATACACTTAGACTACAAGTTGCTCGCAGCTGTATATGGGGCTCTTCTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTGCTTGTGGCGATTTTGGGGTCATTTTTTCTGGCAGAACAGTTGTATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCCGATTCAAAGAAGGCCAATGTGGAAGAACCAACTGGAACCCCAGCGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37ae

Protein Analysis

437

Amino Acids

47.94

Weight (kDa)

8.97

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	107 - 246	1.1e-11	EamA-like transporter family
EamA	PF00892	272 - 410	2.5e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10950 AT3G60245
fragaria_vesca	FvH4_5g20720 FvH4_5g33510 FvH4_7g09070
malus_domestica	MD02G1221600.v1.1 MD04G1053900.v1.1 MD06G1044600.v1.1 MD07G1094700.v1.1 MD13G1011900.v1.1
prunus_persica	Prupe.2G119100_v2.0.a1 Prupe.5G052800_v2.0.a1
pyrus_communis	pycom04g04700 pycom06g03790 pycom07g07800
rosa_chinensis	RchiOBHm_Chr1g0344921 RchiOBHm_Chr3g0477031 RchiOBHm_Chr7g0206491
rosa_laevigata	RLG00000003309 RLG00000003310
rosa_multiflora	Rmu_co8322135.1_g000001 Rmu_sc0000390.1_g000003 Rmu_sc0005065.1_g000043 Rmu_sc0037016.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251480 Rroxscaffold_4G00309520
rosa_rugosa	Rorug01G0175000 Rorug07G0097900
rosa_samantha	Rh1AG193000 Rh1BG159300 Rh1CG178100 Rh1DG190100 Rh3BG241600 Rh7AG229500 Rh7BG226100 Rh7CG244300 Rh7DG236500
rosa_wichuraiana	Rw1G015880 Rw7G019750 Rw7G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	1175
AciI	CCGC	1 cut(s)	915
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	5 cut(s)	204, 423, 597, 687, 1122
AfaI	GTAC	3 cut(s)	255, 461, 882
AfiI	CCNNNNNNNGG	2 cut(s)	541, 739
AgsI	TTSAA	5 cut(s)	53, 88, 338, 971, 1266
AjnI	CCWGG	2 cut(s)	223, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	4 cut(s)	287, 904, 1025, 1196
AluI	AGCT	4 cut(s)	287, 904, 1025, 1196
Alw26I	GTCTC	2 cut(s)	463, 1190
AlwI	GGATC	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	676
ApeKI	GCWGC	4 cut(s)	104, 517, 1022, 1052
Asp718I	GGTACC	1 cut(s)	459
AspLEI	GCGC	2 cut(s)	32, 1306
AspS9I	GGNCC	8 cut(s)	75, 173, 544, 749, 778, 852, 993, 1091
AsuHPI	GGTGA	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	7 cut(s)	75, 173, 544, 778, 852, 993, 1091
BalI	TGGCCA	4 cut(s)	206, 425, 689, 1124
BanI	GGYRCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	1039
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BauI	CACGAG	1 cut(s)	782
BbvI	GCAGC	4 cut(s)	116, 504, 1034, 1039
BccI	CCATC	3 cut(s)	142, 368, 500
BciT130I	CCWGG	2 cut(s)	225, 640
BcoDI	GTCTC	2 cut(s)	463, 1190
BfaI	CTAG	3 cut(s)	464, 477, 836
BfmI	CTRYAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	105, 518, 1023, 1053
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	4 cut(s)	106, 519, 1024, 1054
Bme1390I	CCNGG	2 cut(s)	225, 640
Bme18I	GGWCC	7 cut(s)	75, 173, 544, 778, 852, 993, 1091
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	8 cut(s)	75, 173, 544, 749, 778, 852, 993, 1091
BmiI	GGNNCC	8 cut(s)	174, 230, 461, 703, 750, 779, 1092, 1297
BmrFI	CCNGG	2 cut(s)	225, 640
BmrI	ACTGGG	1 cut(s)	1188
BmuI	ACTGGG	1 cut(s)	1188
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	1 cut(s)	674
Bpu1102I	GCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	869
BsaJI	CCNNGG	7 cut(s)	201, 224, 438, 705, 738, 767, 1119
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 739
Bse1I	ACTGG	5 cut(s)	42, 1077, 1094, 1183, 1297
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	225, 640
BseDI	CCNNGG	7 cut(s)	201, 224, 438, 705, 738, 767, 1119
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	541, 739
BseMI	GCAATG	1 cut(s)	426
BseNI	ACTGG	5 cut(s)	42, 1077, 1094, 1183, 1297
BseXI	GCAGC	4 cut(s)	116, 504, 1034, 1039
BseYI	CCCAGC	2 cut(s)	283, 1300
BshNI	GGYRCC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	5 cut(s)	72, 186, 791, 1083, 1104
BslI	CCNNNNNNNGG	2 cut(s)	541, 739
BsmAI	GTCTC	2 cut(s)	463, 1190
BsmFI	GGGAC	5 cut(s)	72, 186, 791, 1083, 1104
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	1039
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	510, 864, 1246
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	2 cut(s)	738, 767
BspACI	CCGC	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	8 cut(s)	174, 230, 461, 703, 750, 779, 1092, 1297
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	859
BspQI	GCTCTTC	1 cut(s)	1044
BspT107I	GGYRCC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	5 cut(s)	42, 1077, 1094, 1183, 1297
BssECI	CCNNGG	7 cut(s)	201, 224, 438, 705, 738, 767, 1119
BssMI	GATC	3 cut(s)	510, 864, 1246
BssNAI	GTATAC	1 cut(s)	1176
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	6 cut(s)	201, 438, 705, 738, 767, 1119
Bst1107I	GTATAC	1 cut(s)	1176
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	2 cut(s)	225, 640
Bst4CI	ACNGT	4 cut(s)	211, 253, 715, 1170
Bst6I	CTCTTC	1 cut(s)	1044
BstAUI	TGTACA	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	352, 841, 902, 1020
BstDEI	CTNAG	3 cut(s)	380, 521, 1003
BstDSI	CCRYGG	2 cut(s)	738, 767
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	32, 1306
BstKTI	GATC	3 cut(s)	513, 867, 1249
BstMAI	GTCTC	2 cut(s)	463, 1190
BstMBI	GATC	3 cut(s)	510, 864, 1246
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 347, 956
BstNI	CCWGG	2 cut(s)	225, 640
BstNSI	RCATGY	3 cut(s)	9, 529, 613
BstSCI	CCNGG	2 cut(s)	223, 638
BstSFI	CTRYAG	1 cut(s)	667
BstV1I	GCAGC	4 cut(s)	116, 504, 1034, 1039
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstZ17I	GTATAC	1 cut(s)	1176
BtgI	CCRYGG	2 cut(s)	738, 767
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	2 cut(s)	126, 957
BtsIMutI	CAGTG	3 cut(s)	126, 330, 957
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	352, 841, 902, 1020
CciI	TCATGA	1 cut(s)	861
CfoI	GCGC	2 cut(s)	32, 1306
Cfr13I	GGNCC	8 cut(s)	75, 173, 544, 749, 778, 852, 993, 1091
Csp6I	GTAC	3 cut(s)	254, 460, 881
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviQI	GTAC	3 cut(s)	254, 460, 881
DdeI	CTNAG	3 cut(s)	380, 521, 1003
DpnI	GATC	3 cut(s)	512, 866, 1248
DpnII	GATC	3 cut(s)	510, 864, 1246
EaeI	YGGCCR	5 cut(s)	204, 423, 597, 687, 1122
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco130I	CCWWGG	6 cut(s)	201, 438, 705, 738, 767, 1119
Eco147I	AGGCCT	3 cut(s)	354, 481, 1215
Eco24I	GRGCYC	1 cut(s)	1039
Eco47I	GGWCC	7 cut(s)	75, 173, 544, 778, 852, 993, 1091
Eco88I	CYCGRG	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	173, 749
EcoRII	CCWGG	2 cut(s)	223, 638
EcoT14I	CCWWGG	6 cut(s)	201, 438, 705, 738, 767, 1119
EcoT38I	GRGCYC	1 cut(s)	1039
ErhI	CCWWGG	6 cut(s)	201, 438, 705, 738, 767, 1119
FaqI	GGGAC	5 cut(s)	72, 186, 791, 1083, 1104
FblI	GTMKAC	1 cut(s)	1175
Fnu4HI	GCNGC	4 cut(s)	105, 518, 1023, 1053
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	1039
Fsp4HI	GCNGC	4 cut(s)	105, 518, 1023, 1053
FspBI	CTAG	3 cut(s)	464, 477, 836
GlaI	GCGC	2 cut(s)	31, 1305
GluI	GCNGC	4 cut(s)	105, 518, 1023, 1053
GsaI	CCCAGC	2 cut(s)	287, 1304
GsuI	CTGGAG	1 cut(s)	674
HapII	CCGG	1 cut(s)	617
HhaI	GCGC	2 cut(s)	32, 1306
Hin6I	GCGC	2 cut(s)	30, 1304
HinP1I	GCGC	2 cut(s)	30, 1304
HinfI	GANTC	3 cut(s)	69, 1183, 1262
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	2 cut(s)	664, 1176
Hpy188I	TCNGA	3 cut(s)	985, 1193, 1261
Hpy188III	TCNNGA	1 cut(s)	862
Hpy8I	GTNNAC	2 cut(s)	664, 1176
HpyAV	CCTTC	7 cut(s)	20, 157, 289, 762, 938, 1081, 1264
HpyCH4III	ACNGT	4 cut(s)	211, 253, 715, 1170
HpyCH4V	TGCA	9 cut(s)	124, 219, 350, 377, 431, 606, 626, 900, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 347, 956
HpyF3I	CTNAG	3 cut(s)	380, 521, 1003
HspAI	GCGC	2 cut(s)	30, 1304
KpnI	GGTACC	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	510, 864, 1246
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	3 cut(s)	722, 947, 1193
Lsp1109I	GCAGC	4 cut(s)	116, 504, 1034, 1039
MaeI	CTAG	3 cut(s)	464, 477, 836
MaeIII	GTNAC	2 cut(s)	709, 1198
MalI	GATC	3 cut(s)	512, 866, 1248
MboI	GATC	3 cut(s)	510, 864, 1246
MboII	GAAGA	7 cut(s)	583, 789, 817, 1031, 1093, 1096, 1295
MhlI	GDGCHC	1 cut(s)	1039
MlsI	TGGCCA	4 cut(s)	206, 425, 689, 1124
MluCI	AATT	2 cut(s)	83, 309
MluNI	TGGCCA	4 cut(s)	206, 425, 689, 1124
MlyI	GAGTC	2 cut(s)	78, 1192
MnlI	CCTC	8 cut(s)	365, 674, 740, 767, 1205, 1226, 1263, 1267
Mox20I	TGGCCA	4 cut(s)	206, 425, 689, 1124
MscI	TGGCCA	4 cut(s)	206, 425, 689, 1124
MseI	TTAA	2 cut(s)	1113, 1312
MslI	CAYNNNNRTG	3 cut(s)	323, 407, 454
Msp20I	TGGCCA	4 cut(s)	206, 425, 689, 1124
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	2 cut(s)	225, 640
MvaI	CCWGG	2 cut(s)	225, 640
MwoI	GCNNNNNNNGC	3 cut(s)	38, 347, 956
NcoI	CCATGG	2 cut(s)	738, 767
NdeII	GATC	3 cut(s)	510, 864, 1246
NlaIV	GGNNCC	8 cut(s)	174, 230, 461, 703, 750, 779, 1092, 1297
NmeAIII	GCCGAG	2 cut(s)	167, 1085
NspI	RCATGY	3 cut(s)	9, 529, 613
OliI	CACNNNNGTG	1 cut(s)	407
PagI	TCATGA	1 cut(s)	861
PceI	AGGCCT	3 cut(s)	354, 481, 1215
PciSI	GCTCTTC	1 cut(s)	1044
PfeI	GAWTC	1 cut(s)	1262
PkrI	GCNGC	4 cut(s)	106, 519, 1024, 1054
PleI	GAGTC	2 cut(s)	77, 1191
PpsI	GAGTC	2 cut(s)	77, 1191
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	223, 638
PspFI	CCCAGC	2 cut(s)	283, 1300
PspGI	CCWGG	2 cut(s)	223, 638
PspN4I	GGNNCC	8 cut(s)	174, 230, 461, 703, 750, 779, 1092, 1297
PspPI	GGNCC	8 cut(s)	75, 173, 544, 749, 778, 852, 993, 1091
PspPPI	RGGWCCY	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	694, 726
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	255, 461, 882
RsaNI	GTAC	3 cut(s)	254, 460, 881
RseI	CAYNNNNRTG	3 cut(s)	323, 407, 454
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	2 cut(s)	1113, 1312
SatI	GCNGC	4 cut(s)	105, 518, 1023, 1053
Sau3AI	GATC	3 cut(s)	510, 864, 1246
Sau96I	GGNCC	8 cut(s)	75, 173, 544, 749, 778, 852, 993, 1091
SchI	GAGTC	2 cut(s)	78, 1192
ScrFI	CCNGG	2 cut(s)	225, 640
SduI	GDGCHC	1 cut(s)	1039
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	7 cut(s)	75, 173, 544, 778, 852, 993, 1091
SmiMI	CAYNNNNRTG	3 cut(s)	323, 407, 454
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	2 cut(s)	83, 309
SseBI	AGGCCT	3 cut(s)	354, 481, 1215
SsiI	CCGC	1 cut(s)	915
SspMI	CTAG	3 cut(s)	464, 477, 836
StuI	AGGCCT	3 cut(s)	354, 481, 1215
StyD4I	CCNGG	2 cut(s)	223, 638
StyI	CCWWGG	6 cut(s)	201, 438, 705, 738, 767, 1119
TaaI	ACNGT	4 cut(s)	211, 253, 715, 1170
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	83, 309
TatI	WGTACW	2 cut(s)	253, 880
TfiI	GAWTC	1 cut(s)	1262
Tru1I	TTAA	2 cut(s)	1113, 1312
Tru9I	TTAA	2 cut(s)	1113, 1312
TscAI	CASTG	3 cut(s)	126, 330, 957
TseI	GCWGC	4 cut(s)	104, 517, 1022, 1052
TspDTI	ATGAA	3 cut(s)	185, 584, 850
TspRI	CASTG	3 cut(s)	126, 330, 957
VpaK11BI	GGWCC	7 cut(s)	75, 173, 544, 778, 852, 993, 1091
XceI	RCATGY	3 cut(s)	9, 529, 613
XcmI	CCANNNNNNNNNTGG	2 cut(s)	499, 1132
XmiI	GTMKAC	1 cut(s)	1175
XspI	CTAG	3 cut(s)	464, 477, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.