MD04G1053900.v1.1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002592
Physical Location & Seq
Forward (+)
6422401 .. 6424083
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1053900.v1.1.491

Sequence Viewer

Length: 279 bp
ATGACAAAGAGGACGAAGAAGGCCGGTATTGTTGGGAAATATGGAACCCGTTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAAATGGAAGTTAGCCAGCACAGCAAGTATTTCTGTGAATTCTGTGGCAAGTATGCTGTGAAGAGAAAGGCCGTTGGAATTTGGGGATGCAAGGACTGTGGAAAAGTGAAGGCAGGCGGTGCCTATACCTTGAACACTGCTAGTGCTGTGACGGTAAGGAGCACCATTAGAAGGCTGAGGGAGCAAACCGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

93

Amino Acids

10.26

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.6e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 56, 200
AciI CCGC 1 cut(s) 198
AcsI RAATTY 2 cut(s) 119, 159
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 245
AoxI GGCC 2 cut(s) 21, 150
ApoI RAATTY 2 cut(s) 119, 159
BanI GGYRCC 2 cut(s) 56, 200
Bbv12I GWGCWC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 137
BfaI CTAG 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 46, 58, 202
BmsI GCATC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 60
BshFI GGCC 2 cut(s) 23, 152
BshNI GGYRCC 2 cut(s) 56, 200
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 252
BsnI GGCC 2 cut(s) 23, 152
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 23, 152
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 46, 58, 202
BspT107I GGYRCC 2 cut(s) 56, 200
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 179, 235
Bst6I CTCTTC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 98, 196
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 102, 200, 262
BsuRI GGCC 2 cut(s) 23, 152
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 98, 196
Cfr10I RCCGGY 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 4 cut(s) 23, 96, 152, 256
CviKI_1 RGCY 4 cut(s) 23, 96, 152, 256
DdeI CTNAG 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 119
FaiI YATR 4 cut(s) 42, 54, 135, 207
FokI GGATG 1 cut(s) 180
FspBI CTAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 23, 152
HapII CCGG 1 cut(s) 24
HpaII CCGG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 13, 184, 246
HpyCH4III ACNGT 2 cut(s) 179, 235
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 200, 262
HpyF3I CTNAG 1 cut(s) 257
LmnI GCTCC 2 cut(s) 240, 262
LpnPI CCDG 4 cut(s) 37, 73, 110, 180
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 2 cut(s) 28, 154
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 119, 159
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 2 cut(s) 3, 252
MseI TTAA 2 cut(s) 78, 277
MspI CCGG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 102, 200, 262
NlaIV GGNNCC 3 cut(s) 46, 58, 202
NmuCI GTSAC 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 46, 58, 202
SaqAI TTAA 2 cut(s) 78, 277
SduI GDGCHC 1 cut(s) 245
SetI ASST 1 cut(s) 212
SfaNI GCATC 1 cut(s) 158
Sse9I AATT 2 cut(s) 119, 159
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 179, 235
TasI AATT 2 cut(s) 119, 159
Tru1I TTAA 2 cut(s) 78, 277
Tru9I TTAA 2 cut(s) 78, 277
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 223
XapI RAATTY 2 cut(s) 119, 159
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.