Rh7AG229500

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002592
Physical Location & Seq
Reverse (-)
21686365 .. 21687768
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG229500.1

Sequence Viewer

Length: 195 bp
ATGGAAGTCAGTCAGCACAGCAAGTATTTCTGTGAATTCTGCGGCAAGTATGCTGTGAAGAGGAAAGCTGTTGGCATCTGGGGATGCAAGGACTGTGGCAAAGTGAAGGCTGGTGGTGCCTATACTTTGAACACTGCTGCAGCCGTTACAGTTAGAAGCACCATCAGGAGGCTGAGGGAGCAAACTGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

64

Amino Acids

7.09

Weight (kDa)

9.59

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 1 - 60 1.8e-25 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 137, 140
ApoI RAATTY 1 cut(s) 35
BanI GGYRCC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 124, 152
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 3 cut(s) 43, 138, 141
BlsI GCNGC 3 cut(s) 44, 139, 142
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 2 cut(s) 74, 84
Bpu10I CCTNAGC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 164, 177
BseXI GCAGC 2 cut(s) 124, 152
BshNI GGYRCC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 168
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 165, 178
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 95, 151
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 173, 186
BstF5I GGATG 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 116, 178
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 124, 152
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviJI RGCY 4 cut(s) 68, 110, 143, 172
CviKI_1 RGCY 4 cut(s) 68, 110, 143, 172
DdeI CTNAG 2 cut(s) 173, 186
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 35
FaiI YATR 2 cut(s) 51, 123
Fnu4HI GCNGC 3 cut(s) 43, 138, 141
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 43, 138, 141
GluI GCNGC 3 cut(s) 43, 138, 141
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 95, 151
HpyCH4V TGCA 2 cut(s) 87, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 178
HpyF3I CTNAG 2 cut(s) 173, 186
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 64, 96, 151
Lsp1109I GCAGC 2 cut(s) 124, 152
LweI GCATC 2 cut(s) 74, 84
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 1 cut(s) 70
MluCI AATT 1 cut(s) 35
MnlI CCTC 3 cut(s) 54, 162, 168
MseI TTAA 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 116, 178
NlaIV GGNNCC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 44, 139, 142
PspN4I GGNNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 193
SatI GCNGC 3 cut(s) 43, 138, 141
SetI ASST 1 cut(s) 70
SfaNI GCATC 2 cut(s) 74, 84
SfcI CTRYAG 1 cut(s) 138
SgeI CNNG 6 cut(s) 34, 58, 91, 100, 123, 178
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 42
TaaI ACNGT 2 cut(s) 95, 151
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 137, 140
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.