Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002592

Physical Location & Seq

Genomic Coordinates Forward (+)

7683056 .. 7683307

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCATTGCTCTGCTAAATCCCTAAAAATTTTGGGAATTGGAATCTTCATAGACAAATTTGAGGTATGGCTGTCTCGATTTCTAGCAGCTGTGGGTTTCCTAGCCATCAGAGTGATTTTCTCACAGGAGACCCTTTGGATCCAAATCGGACGGTCCCAAGTCGTCAGTTCTCTCCACCTACCTGAAGCTGGCTCATCTGCTCAGCTCCTCCACGGCGTTCGGCGCCAGTCTCAAGGTCACCTTCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37ae

Protein Analysis

83

Amino Acids

9.24

Weight (kDa)

10.84

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10950 AT3G60245
fragaria_vesca	FvH4_5g20720 FvH4_5g33510 FvH4_7g09070
malus_domestica	MD02G1221600.v1.1 MD04G1053900.v1.1 MD06G1044600.v1.1 MD07G1094700.v1.1 MD13G1011900.v1.1
prunus_persica	Prupe.2G119100_v2.0.a1 Prupe.5G052800_v2.0.a1
pyrus_communis	pycom04g04700 pycom06g03790 pycom07g07800
rosa_chinensis	RchiOBHm_Chr1g0344921 RchiOBHm_Chr3g0477031 RchiOBHm_Chr7g0206491
rosa_laevigata	RLG00000003309 RLG00000003310
rosa_multiflora	Rmu_co8322135.1_g000001 Rmu_sc0000390.1_g000003 Rmu_sc0005065.1_g000043 Rmu_sc0037016.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251480 Rroxscaffold_4G00309520
rosa_rugosa	Rorug01G0175000 Rorug07G0097900
rosa_samantha	Rh1AG193000 Rh1BG159300 Rh1CG178100 Rh1DG190100 Rh3BG241600 Rh7AG229500 Rh7BG226100 Rh7CG244300 Rh7DG236500
rosa_wichuraiana	Rw1G015880 Rw7G019750 Rw7G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AclWI	GGATC	2 cut(s)	133, 146
AcsI	RAATTY	2 cut(s)	27, 56
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	89, 188, 205
AluI	AGCT	3 cut(s)	89, 188, 205
Alw26I	GTCTC	3 cut(s)	78, 122, 234
AlwI	GGATC	2 cut(s)	133, 146
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	27, 56
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	78, 122, 234
BfaI	CTAG	2 cut(s)	83, 101
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	1 cut(s)	87
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	140, 155, 224
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	211, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	4
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	211, 245
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	3 cut(s)	78, 122, 234
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	140, 155, 224
BspPI	GGATC	2 cut(s)	133, 146
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	211, 245
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	211
BstEII	GGTNACC	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	3 cut(s)	78, 122, 234
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	153
CviJI	RGCY	6 cut(s)	70, 89, 104, 188, 192, 205
CviKI_1	RGCY	6 cut(s)	70, 89, 104, 188, 192, 205
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
FaiI	YATR	2 cut(s)	50, 67
FalI	AAGNNNNNCTT	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	83, 101
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	110, 149
Hpy188III	TCNNGA	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	223
HspAI	GCGC	1 cut(s)	223
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	4 cut(s)	110, 174, 195, 239
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	83, 101
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	3 cut(s)	27, 36, 56
Mly113I	GGCGCC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	55, 218
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	223
NdeII	GATC	1 cut(s)	138
NlaIV	GGNNCC	3 cut(s)	140, 155, 224
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	140, 155, 224
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	153
SetI	ASST	8 cut(s)	66, 91, 180, 184, 190, 207, 238, 243
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	27, 36, 56
SspDI	GGCGCC	1 cut(s)	222
SspMI	CTAG	2 cut(s)	83, 101
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	27, 36, 56
TfiI	GAWTC	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	27, 56
XspI	CTAG	2 cut(s)	83, 101
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.