Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

5376251 .. 5377179

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCAGGTTCTGTCTTCGTTCCCGGTATGGCGATTGGAGTTCCCACGCTTTCTCGTTCGAGCTCTGTTCACCGGAGCTTAGAACCGACGAAGAAGATGACTATGAGTAGTGTCAAATTCGTGACCAGTTTTCGAAACCCGTCAAACTGTTCAGGGACAAAACGGTCATTTCGCGTTATGGCTTCCGATGACCGGTCGGAACAAGCAGATAACGGTCAAGGAATTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGGCAGGTGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATCTCACTCTAGCCCTCTTCATTATCATAGCTCCTGTTGTAATCTCCGTTATCCTTTTGTCCCTATCATCATCATCTTCCTCCAAGAAACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.01

Weight (kDa)

10.17

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	263
AccII	CGCG	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	116, 222
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	4 cut(s)	63, 78, 281, 359
AluI	AGCT	4 cut(s)	63, 78, 281, 359
Alw21I	GWGCWC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	116, 222
AsiGI	ACCGGT	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	24
BsaWI	WCCGGW	2 cut(s)	72, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	24, 73, 193
BslFI	GGGAC	2 cut(s)	169, 373
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	169, 373
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	252, 315
BspFNI	CGCG	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	192
BssMI	GATC	2 cut(s)	252, 315
Bst4CI	ACNGT	3 cut(s)	149, 165, 215
Bst6I	CTCTTC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	255, 318
BstMBI	GATC	2 cut(s)	252, 315
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	192
CspAI	ACCGGT	1 cut(s)	192
CviJI	RGCY	6 cut(s)	63, 78, 182, 281, 341, 359
CviKI_1	RGCY	6 cut(s)	63, 78, 182, 281, 341, 359
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	254, 317
DpnII	GATC	2 cut(s)	252, 315
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	65
FaiI	YATR	5 cut(s)	29, 104, 179, 284, 356
FaqI	GGGAC	2 cut(s)	169, 373
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	279
HapII	CCGG	3 cut(s)	24, 73, 193
HpaII	CCGG	3 cut(s)	24, 73, 193
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	187, 199, 257
Hpy188III	TCNNGA	2 cut(s)	121, 227
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	149, 165, 215
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	252, 315
LmnI	GCTCC	2 cut(s)	75, 364
LpnPI	CCDG	8 cut(s)	37, 86, 138, 139, 206, 212, 258, 375
Lsp1109I	GCAGC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	254, 317
MboI	GATC	2 cut(s)	252, 315
MboII	GAAGA	6 cut(s)	7, 103, 106, 262, 337, 396
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	116, 222
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	223, 353, 418
MseI	TTAA	1 cut(s)	236
MspI	CCGG	3 cut(s)	24, 73, 193
MspR9I	CCNGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	252, 315
NmuCI	GTSAC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	252, 315
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	10, 65, 80, 277, 283, 328, 361
SfuI	TTCGAA	1 cut(s)	133
Sse9I	AATT	2 cut(s)	116, 222
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	149, 165, 215
TaqI	TCGA	2 cut(s)	59, 133
TasI	AATT	2 cut(s)	116, 222
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	337
TspGWI	ACGGA	2 cut(s)	309, 364
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	2 cut(s)	116, 222
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.