Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Forward (+)

55862875 .. 55865269

Gene Structure 2395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGGCGGCAACTGCAGCAGCAGCAGCTTCAGGAGCCCCCAAGCTCCTCCTCCGGTGCAGGCAGTCCTCCTCTTCCGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCACAAGGGCCAAAGTGTCTTCTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGAAGCAGAAGAGAATTCAAGCATCGTTAACAACGCCACCGGTTTCAACTCTCAGAAGGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.64

Weight (kDa)

9.75

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	108, 225, 253
AluBI	AGCT	7 cut(s)	29, 46, 113, 176, 293, 314, 407
AluI	AGCT	7 cut(s)	29, 46, 113, 176, 293, 314, 407
Alw21I	GWGCWC	1 cut(s)	178
AoxI	GGCC	3 cut(s)	80, 99, 150
ApeKI	GCWGC	6 cut(s)	17, 20, 23, 26, 113, 330
ApoI	RAATTY	1 cut(s)	220
AsiGI	ACCGGT	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	80, 150
AsuC2I	CCSGG	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	40, 178
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	6 cut(s)	29, 32, 35, 38, 100, 342
BccI	CCATC	2 cut(s)	125, 176
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	2 cut(s)	290, 404
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 114, 331
BlsI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 28, 115, 332
Bme1390I	CCNGG	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	80, 150
BmiI	GGNNCC	2 cut(s)	37, 298
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	79
BsaWI	WCCGGW	2 cut(s)	54, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	117, 123, 168
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	272, 336
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	3 cut(s)	38, 41, 61
BseXI	GCAGC	6 cut(s)	29, 32, 35, 38, 100, 342
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	82, 101, 152
BshTI	ACCGGT	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	55, 78, 246
BslI	CCNNNNNNNGG	1 cut(s)	78
BsnI	GGCC	3 cut(s)	82, 101, 152
Bsp1286I	GDGCHC	2 cut(s)	40, 178
Bsp143I	GATC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	82, 101, 152
BspCNI	CTCAG	2 cut(s)	271, 337
BspLI	GGNNCC	2 cut(s)	37, 298
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	245
BssMI	GATC	1 cut(s)	420
Bst6I	CTCTTC	4 cut(s)	79, 109, 145, 210
BstC8I	GCNNGC	3 cut(s)	62, 84, 291
BstDEI	CTNAG	2 cut(s)	258, 345
BstF5I	GGATG	3 cut(s)	117, 123, 168
BstKTI	GATC	1 cut(s)	423
BstMBI	GATC	1 cut(s)	420
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	6 cut(s)	29, 32, 35, 38, 100, 342
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	82, 101, 152
BtsCI	GGATG	3 cut(s)	117, 123, 168
Cac8I	GCNNGC	3 cut(s)	62, 84, 291
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	80, 150
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	258, 345
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
Eam1104I	CTCTTC	4 cut(s)	79, 109, 145, 210
EarI	CTCTTC	4 cut(s)	79, 109, 145, 210
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	2 cut(s)	40, 178
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	40, 178
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	98, 327, 335, 368, 383
FatI	CATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 114, 331
FokI	GGATG	3 cut(s)	104, 110, 155
FriOI	GRGCYC	2 cut(s)	40, 178
Fsp4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 114, 331
FspBI	CTAG	2 cut(s)	290, 404
GluI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 114, 331
HaeIII	GGCC	3 cut(s)	82, 101, 152
HapII	CCGG	3 cut(s)	55, 78, 246
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	3 cut(s)	55, 78, 246
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	173, 261, 420
Hpy188III	TCNNGA	3 cut(s)	33, 179, 344
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	256, 277
HpyCH4V	TGCA	4 cut(s)	17, 60, 86, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
HpyF3I	CTNAG	2 cut(s)	258, 345
Hsp92II	CATG	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	420
LmnI	GCTCC	3 cut(s)	35, 51, 311
Lsp1109I	GCAGC	6 cut(s)	29, 32, 35, 38, 100, 342
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	2 cut(s)	290, 404
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	8 cut(s)	66, 96, 132, 153, 212, 215, 218, 227
MhlI	GDGCHC	2 cut(s)	40, 178
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	6 cut(s)	59, 62, 79, 82, 112, 195
MseI	TTAA	1 cut(s)	234
MspI	CCGG	3 cut(s)	55, 78, 246
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	420
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	37, 298
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 28, 115, 332
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	37, 298
PspPI	GGNCC	2 cut(s)	80, 150
PstI	CTGCAG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 114, 331
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	2 cut(s)	80, 150
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	40, 178
SetI	ASST	8 cut(s)	31, 48, 115, 178, 288, 295, 316, 409
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	290, 404
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	77
TasI	AATT	1 cut(s)	220
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	6 cut(s)	17, 20, 23, 26, 113, 330
TspDTI	ATGAA	1 cut(s)	85
XapI	RAATTY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	2 cut(s)	290, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.