Rh2DG395900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002834
Physical Location & Seq
Forward (+)
57562544 .. 57564337
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG395900.1

Sequence Viewer

Length: 270 bp
ATGGCGGCGGCAACTGCAGCAGCAGCAGCTACTGGAGCCGCCAAGTTCCTCCTCCGGTGCAGGCACTCCCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCATAAGGGCCACAAGGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGTAGACGACAACAAGAAGAAGCAGAAGAGAATTCAAGCATAGTTAACAACGCCACCGGTTTCAACTATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.5

Weight (kDa)

10.82

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AciI CCGC 3 cut(s) 5, 8, 39
AcsI RAATTY 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 77, 78
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 3 cut(s) 108, 231, 259
AluBI AGCT 3 cut(s) 29, 113, 185
AluI AGCT 3 cut(s) 29, 113, 185
Alw21I GWGCWC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 4 cut(s) 80, 99, 150, 159
ApeKI GCWGC 5 cut(s) 17, 20, 23, 26, 113
ApoI RAATTY 1 cut(s) 226
AsiGI ACCGGT 1 cut(s) 251
AspS9I GGNCC 3 cut(s) 80, 150, 159
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 5 cut(s) 29, 32, 35, 38, 100
BccI CCATC 2 cut(s) 125, 185
BfmI CTRYAG 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 8 cut(s) 6, 9, 18, 21, 24, 27, 39, 114
BlsI GCNGC 8 cut(s) 7, 10, 19, 22, 25, 28, 40, 115
BmgT120I GGNCC 3 cut(s) 80, 150, 159
BmiI GGNNCC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 54
BsaWI WCCGGW 2 cut(s) 54, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 78
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 130
BseGI GGATG 3 cut(s) 117, 123, 177
BseLI CCNNNNNNNGG 2 cut(s) 77, 78
BseMI GCAATG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 5 cut(s) 29, 32, 35, 38, 100
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 4 cut(s) 82, 101, 152, 161
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 55, 252
BslI CCNNNNNNNGG 2 cut(s) 77, 78
BsnI GGCC 4 cut(s) 82, 101, 152, 161
Bsp1286I GDGCHC 1 cut(s) 187
BspACI CCGC 3 cut(s) 5, 8, 39
BspANI GGCC 4 cut(s) 82, 101, 152, 161
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 251
Bst6I CTCTTC 4 cut(s) 79, 109, 145, 216
BstC8I GCNNGC 2 cut(s) 62, 84
BstF5I GGATG 3 cut(s) 117, 123, 177
BstMWI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 35, 158
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 5 cut(s) 29, 32, 35, 38, 100
BsuRI GGCC 4 cut(s) 82, 101, 152, 161
BtsCI GGATG 3 cut(s) 117, 123, 177
Cac8I GCNNGC 2 cut(s) 62, 84
CaiI CAGNNNCTG 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 80, 150, 159
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 29, 38, 82, 101, 113, 152, 161, 185
CviKI_1 RGCY 8 cut(s) 29, 38, 82, 101, 113, 152, 161, 185
Eam1104I CTCTTC 4 cut(s) 79, 109, 145, 216
EarI CTCTTC 4 cut(s) 79, 109, 145, 216
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 98, 146, 236
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 8 cut(s) 6, 9, 18, 21, 24, 27, 39, 114
FokI GGATG 3 cut(s) 104, 110, 164
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 8 cut(s) 6, 9, 18, 21, 24, 27, 39, 114
GluI GCNGC 8 cut(s) 6, 9, 18, 21, 24, 27, 39, 114
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 4 cut(s) 82, 101, 152, 161
HapII CCGG 2 cut(s) 55, 252
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 2 cut(s) 55, 252
Hpy166II GTNNAC 2 cut(s) 200, 241
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 200, 241
HpyCH4V TGCA 3 cut(s) 17, 60, 86
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 35, 158
Hsp92II CATG 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 18, 46, 63, 68, 96, 265
Lsp1109I GCAGC 5 cut(s) 29, 32, 35, 38, 100
MboII GAAGA 5 cut(s) 66, 96, 132, 224, 233
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 226
MnlI CCTC 5 cut(s) 59, 62, 82, 112, 204
MseI TTAA 1 cut(s) 240
MspI CCGG 2 cut(s) 55, 252
MwoI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 35, 158
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 37
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 8 cut(s) 7, 10, 19, 22, 25, 28, 40, 115
Psp124BI GAGCTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 80, 150, 159
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 8 cut(s) 6, 9, 18, 21, 24, 27, 39, 114
Sau96I GGNCC 3 cut(s) 80, 150, 159
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 31, 115, 187
SfcI CTRYAG 1 cut(s) 15
SfiI GGCCNNNNNGGCC 1 cut(s) 158
Sse9I AATT 1 cut(s) 226
SsiI CCGC 3 cut(s) 5, 8, 39
SstI GAGCTC 1 cut(s) 187
TasI AATT 1 cut(s) 226
TauI GCSGC 3 cut(s) 8, 11, 41
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 5 cut(s) 17, 20, 23, 26, 113
TspDTI ATGAA 1 cut(s) 85
XapI RAATTY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.