Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Forward (+)

34158659 .. 34160997

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCGGGCTCCTCCTCCTCCGGTACTCCCCCTCTTCTGGGCCGGCAACCATCTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCAGATAGCTTCTCTTCCACAAGGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGCTATTCAGGACCGTCCTTCCCTTTCTGGCCGGTTGTGGGTGAGGAGGGATTCAAACCCCTATATAAAAATTTCTTCTTATACGGCTCAAACAGATACACCCCAATCCAGGCTGAGAATGTGTACAAGTCAGTGACAATGAAGGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.32

Weight (kDa)

9.87

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	210, 319
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	58, 374
AfiI	CCNNNNNNNGG	4 cut(s)	70, 71, 287, 358
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	101, 243, 304
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	7 cut(s)	26, 106, 128, 169, 422, 443, 536
AluI	AGCT	7 cut(s)	26, 106, 128, 169, 422, 443, 536
Alw21I	GWGCWC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	4 cut(s)	73, 92, 143, 278
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 106, 459
ApoI	RAATTY	2 cut(s)	210, 319
AsiGI	ACCGGT	1 cut(s)	235
AspS9I	GGNCC	3 cut(s)	73, 143, 260
AsuC2I	CCSGG	2 cut(s)	38, 39
AsuHPI	GGTGA	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	260
BanII	GRGCYC	3 cut(s)	37, 44, 171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	29, 32, 35, 93, 471
BccI	CCATC	3 cut(s)	91, 118, 169
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	2 cut(s)	38, 39
BfaI	CTAG	2 cut(s)	419, 533
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 107, 460
BlsI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 108, 461
Bme1390I	CCNGG	3 cut(s)	38, 39, 359
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	73, 143, 260
BmiI	GGNNCC	3 cut(s)	34, 43, 427
BmrFI	CCNGG	3 cut(s)	38, 39, 359
BmsI	GCATC	1 cut(s)	227
BmtI	GCTAGC	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	38, 39
BsaJI	CCNNGG	2 cut(s)	36, 37
BsaWI	WCCGGW	2 cut(s)	53, 235
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 71, 287, 358
Bse118I	RCCGGY	3 cut(s)	75, 235, 280
Bse1I	ACTGG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	36, 37
BseGI	GGATG	3 cut(s)	110, 116, 161
BseLI	CCNNNNNNNGG	4 cut(s)	70, 71, 287, 358
BseMII	CTCAG	2 cut(s)	354, 465
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	4 cut(s)	34, 37, 40, 308
BseXI	GCAGC	5 cut(s)	29, 32, 35, 93, 471
BshFI	GGCC	4 cut(s)	75, 94, 145, 280
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	38, 54, 76, 236, 281
BslI	CCNNNNNNNGG	4 cut(s)	70, 71, 287, 358
BsnI	GGCC	4 cut(s)	75, 94, 145, 280
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	37, 44, 171
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	549
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	4 cut(s)	75, 94, 145, 280
BspCNI	CTCAG	2 cut(s)	355, 466
BspLI	GGNNCC	3 cut(s)	34, 43, 427
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	422
BsrFI	RCCGGY	3 cut(s)	75, 235, 280
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	504
BssAI	RCCGGY	3 cut(s)	75, 235, 280
BssECI	CCNNGG	2 cut(s)	36, 37
BssMI	GATC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	4 cut(s)	72, 102, 138, 200
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	77, 420
BstDEI	CTNAG	2 cut(s)	363, 474
BstF5I	GGATG	3 cut(s)	110, 116, 161
BstKTI	GATC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	36, 37, 357
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 32, 35, 93, 471
BstXI	CCANNNNNNTGG	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	75, 94, 145, 280
BtsCI	GGATG	3 cut(s)	110, 116, 161
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	77, 420
Cfr10I	RCCGGY	3 cut(s)	75, 235, 280
Cfr13I	GGNCC	3 cut(s)	73, 143, 260
Cfr9I	CCCGGG	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	57, 373
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	2 cut(s)	57, 373
DdeI	CTNAG	2 cut(s)	363, 474
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	4 cut(s)	72, 102, 138, 200
EarI	CTCTTC	4 cut(s)	72, 102, 138, 200
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	3 cut(s)	37, 44, 171
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	357
EcoT38I	GRGCYC	3 cut(s)	37, 44, 171
FaeI	CATG	1 cut(s)	93
FaiI	YATR	8 cut(s)	91, 313, 315, 331, 456, 464, 497, 512
FatI	CATG	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 107, 460
FokI	GGATG	3 cut(s)	97, 103, 148
FriOI	GRGCYC	3 cut(s)	37, 44, 171
Fsp4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 107, 460
FspBI	CTAG	2 cut(s)	419, 533
GluI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 107, 460
HaeIII	GGCC	4 cut(s)	75, 94, 145, 280
HapII	CCGG	5 cut(s)	38, 54, 76, 236, 281
Hin1II	CATG	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	300
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	5 cut(s)	38, 54, 76, 236, 281
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	225, 373
Hpy188I	TCNGA	2 cut(s)	166, 549
Hpy188III	TCNNGA	4 cut(s)	30, 172, 258, 473
Hpy8I	GTNNAC	2 cut(s)	225, 373
HpyAV	CCTTC	3 cut(s)	277, 385, 406
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	17, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
HpyF3I	CTNAG	2 cut(s)	363, 474
Hsp92II	CATG	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	32, 47, 440
Lsp1109I	GCAGC	5 cut(s)	29, 32, 35, 93, 471
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	419, 533
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	8 cut(s)	59, 78, 89, 125, 205, 208, 217, 316
MhlI	GDGCHC	3 cut(s)	37, 44, 171
MluCI	AATT	2 cut(s)	210, 319
MnlI	CCTC	8 cut(s)	55, 58, 61, 75, 105, 188, 286, 289
MroNI	GCCGGC	1 cut(s)	75
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	88
MspI	CCGG	5 cut(s)	38, 54, 76, 236, 281
MspR9I	CCNGG	3 cut(s)	38, 39, 359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	38, 39
NdeII	GATC	1 cut(s)	549
NgoMIV	GCCGGC	1 cut(s)	75
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	3 cut(s)	34, 43, 427
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	382
PdiI	GCCGGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	300
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 108, 461
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	34, 43, 427
PspPI	GGNCC	3 cut(s)	73, 143, 260
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	58, 374
RsaNI	GTAC	2 cut(s)	57, 373
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 107, 460
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	3 cut(s)	73, 143, 260
ScrFI	CCNGG	3 cut(s)	38, 39, 359
SduI	GDGCHC	3 cut(s)	37, 44, 171
SetI	ASST	8 cut(s)	28, 108, 130, 171, 417, 424, 445, 538
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	260
SmaI	CCCGGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	88
Sse9I	AATT	2 cut(s)	210, 319
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	419, 533
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	36, 37, 357
TaaI	ACNGT	1 cut(s)	264
TasI	AATT	2 cut(s)	210, 319
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	5 cut(s)	17, 20, 23, 106, 459
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	78, 404
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	210, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmaI	CCCGGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	419, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.