Rh3DG355600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002834
Physical Location & Seq
Reverse (-)
43224080 .. 43248440
24361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG355600.1

Sequence Viewer

Length: 366 bp
ATGGTCCGAGTCCGAATGGATGAGGGTTTAAACGGGCTTGGGTTTAAGGAGATCGGTGATTGGCCGAAAGAAAAAAGGATGGCTCAGGCTCTTGACCCTCGCAGACGACAAGAAGGAGAAGCAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGATTTCTGTTTTCAATTCAGAGGATGAGTTCCATTCTATGGTTTATAAAGTAGAGCAGCGTTCTGATTTTCGGATTTTGAAGAAATTTTATAAGCAGTGTGATCCTGTGTTGTGCATTTGGCTGGATTCTAAACAAACGAAAGCATCAGTTAAGAATATTGGTCCAACTTCTAAGATCGATTCTAATTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.98

Weight (kDa)

7.74

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 216, 261
AccB7I CCANNNNNTGG 1 cut(s) 208
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 2 cut(s) 130, 254
AfiI CCNNNNNNNGG 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 4 cut(s) 135, 163, 184, 250
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 130, 254
AsiGI ACCGGT 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 4, 332
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 4, 332
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 73
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 2 cut(s) 4, 332
BmgT120I GGNCC 2 cut(s) 4, 332
BmsI GCATC 2 cut(s) 147, 323
Bpu10I CCTNAGC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 348
BseGI GGATG 3 cut(s) 25, 84, 199
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 98, 182
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 155
BshVI ATCGAT 1 cut(s) 348
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 51, 271, 345
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 97, 181
BspDI ATCGAT 1 cut(s) 348
BspPI GGATC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 3 cut(s) 51, 271, 345
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 84, 168, 342
BstF5I GGATG 3 cut(s) 25, 84, 199
BstKTI GATC 3 cut(s) 54, 274, 348
BstMBI GATC 3 cut(s) 51, 271, 345
BstV1I GCAGC 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 348
BtsCI GGATG 3 cut(s) 25, 84, 199
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 4, 332
ClaI ATCGAT 1 cut(s) 348
CspAI ACCGGT 1 cut(s) 155
CviJI RGCY 5 cut(s) 37, 64, 83, 89, 292
CviKI_1 RGCY 5 cut(s) 37, 64, 83, 89, 292
DdeI CTNAG 3 cut(s) 84, 168, 342
DpnI GATC 3 cut(s) 53, 273, 347
DpnII GATC 3 cut(s) 51, 271, 345
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 4, 332
EcoRI GAATTC 1 cut(s) 130
FaiI YATR 3 cut(s) 209, 216, 261
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 3 cut(s) 32, 91, 206
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 156
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 3 cut(s) 9, 296, 350
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 6 cut(s) 8, 14, 171, 190, 235, 243
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 285
HpyF3I CTNAG 3 cut(s) 84, 168, 342
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 51, 271, 345
LpnPI CCDG 4 cut(s) 71, 169, 278, 288
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 147, 323
MalI GATC 3 cut(s) 53, 273, 347
MboI GATC 3 cut(s) 51, 271, 345
MboII GAAGA 2 cut(s) 137, 262
MluCI AATT 4 cut(s) 130, 184, 254, 355
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 3 cut(s) 16, 108, 184
MseI TTAA 4 cut(s) 29, 45, 144, 321
MspI CCGG 1 cut(s) 156
MssI GTTTAAAC 1 cut(s) 30
NdeII GATC 3 cut(s) 51, 271, 345
PfeI GAWTC 2 cut(s) 296, 350
PflMI CCANNNNNTGG 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 17
PmeI GTTTAAAC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 17
PsiI TTATAA 2 cut(s) 216, 261
PspPI GGNCC 2 cut(s) 4, 332
SaqAI TTAA 4 cut(s) 29, 45, 144, 321
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 51, 271, 345
Sau96I GGNCC 2 cut(s) 4, 332
SchI GAGTC 1 cut(s) 18
SfaNI GCATC 2 cut(s) 147, 323
SinI GGWCC 2 cut(s) 4, 332
Sse9I AATT 4 cut(s) 130, 184, 254, 355
SspI AATATT 1 cut(s) 328
TaqI TCGA 1 cut(s) 348
TasI AATT 4 cut(s) 130, 184, 254, 355
TfiI GAWTC 2 cut(s) 296, 350
Tru1I TTAA 4 cut(s) 29, 45, 144, 321
Tru9I TTAA 4 cut(s) 29, 45, 144, 321
TscAI CASTG 1 cut(s) 272
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 349
TspRI CASTG 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 4, 332
XapI RAATTY 2 cut(s) 130, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.