Rmu_ssc0000438.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000438.1
OG0002834
Physical Location & Seq
Forward (+)
88750 .. 91779
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000438.1_g000024.1.cds

Sequence Viewer

Length: 483 bp
atgcttaggcattttgacaaggttaagccttcaagcacccccatgatcgtctgtattcttgatcctgaaaaggatcctcttagtcgaaaagatgatgacgaagatgtgttagaggcagaagatagaatatggcggcggcaacaagggccatccacatcccagattgcttctcttccacaagggccaaagggtcttttcccatccgaccccttgagccttgaccctcgcagacgacaagaagaagaagcagaagagagttcaagcatcgttaacaacaccaccggtttcaactctcagaaggatttggaatatctggggaaggtgctagttggttccattgtgggtggagctgtaataaagtatggcggcatagtttttcctgagataaccagacccaacatcatactggctcttattatgatattcactcctgtcattctagctactttacttctgatcaagcaaagtcgtgcaaatggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.7

Weight (kDa)

5.25

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 133, 136, 366
AclWI GGATC 3 cut(s) 56, 68, 81
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 33, 261, 289
AluBI AGCT 2 cut(s) 350, 443
AluI AGCT 2 cut(s) 350, 443
AlwI GGATC 3 cut(s) 56, 68, 81
AoxI GGCC 2 cut(s) 146, 182
AsiGI ACCGGT 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 146, 182
BamHI GGATCC 1 cut(s) 73
BccI CCATC 2 cut(s) 157, 208
BclI TGATCA 1 cut(s) 456
BfaI CTAG 2 cut(s) 326, 440
BisI GCNGC 3 cut(s) 134, 137, 367
BlsI GCNGC 3 cut(s) 135, 138, 368
BmgT120I GGNCC 2 cut(s) 146, 182
BmiI GGNNCC 2 cut(s) 75, 334
BmsI GCATC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 149, 155, 200
BseMII CTCAG 2 cut(s) 308, 372
BseNI ACTGG 1 cut(s) 411
BshFI GGCC 2 cut(s) 148, 184
BshTI ACCGGT 1 cut(s) 281
BsiSI CCGG 1 cut(s) 282
BsnI GGCC 2 cut(s) 148, 184
Bsp143I GATC 4 cut(s) 45, 61, 73, 456
BspACI CCGC 3 cut(s) 133, 136, 366
BspANI GGCC 2 cut(s) 148, 184
BspCNI CTCAG 2 cut(s) 307, 373
BspLI GGNNCC 2 cut(s) 75, 334
BspPI GGATC 3 cut(s) 56, 68, 81
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 4 cut(s) 45, 61, 73, 456
Bst6I CTCTTC 2 cut(s) 177, 246
BstDEI CTNAG 4 cut(s) 5, 80, 294, 381
BstF5I GGATG 3 cut(s) 149, 155, 200
BstKTI GATC 4 cut(s) 48, 64, 76, 459
BstMBI GATC 4 cut(s) 45, 61, 73, 456
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 148, 184
BtsCI GGATG 3 cut(s) 149, 155, 200
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 146, 182
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 43
CviJI RGCY 7 cut(s) 28, 148, 184, 216, 350, 410, 443
CviKI_1 RGCY 7 cut(s) 28, 148, 184, 216, 350, 410, 443
DdeI CTNAG 4 cut(s) 5, 80, 294, 381
DpnI GATC 4 cut(s) 47, 63, 75, 458
DpnII GATC 4 cut(s) 45, 61, 73, 456
Eam1104I CTCTTC 2 cut(s) 177, 246
EarI CTCTTC 2 cut(s) 177, 246
FaeI CATG 1 cut(s) 46
FaiI YATR 6 cut(s) 44, 130, 363, 371, 404, 419
FatI CATG 1 cut(s) 42
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 134, 137, 367
FokI GGATG 3 cut(s) 136, 142, 187
Fsp4HI GCNGC 3 cut(s) 134, 137, 367
FspBI CTAG 2 cut(s) 326, 440
GluI GCNGC 3 cut(s) 134, 137, 367
HaeIII GGCC 2 cut(s) 148, 184
HapII CCGG 1 cut(s) 282
Hin1II CATG 1 cut(s) 46
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 205, 297, 456
Hpy188III TCNNGA 3 cut(s) 59, 65, 380
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 39, 292, 313
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 4 cut(s) 5, 80, 294, 381
Hsp92II CATG 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 4 cut(s) 45, 61, 73, 456
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 8 cut(s) 78, 173, 295, 299, 392, 393, 403, 444
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 326, 440
MalI GATC 4 cut(s) 47, 63, 75, 458
MboI GATC 4 cut(s) 45, 61, 73, 456
MboII GAAGA 6 cut(s) 113, 131, 164, 251, 254, 263
MflI RGATCY 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 3 cut(s) 87, 106, 234
MseI TTAA 2 cut(s) 24, 270
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 4 cut(s) 45, 61, 73, 456
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 75, 334
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 3 cut(s) 135, 138, 368
PspN4I GGNNCC 2 cut(s) 75, 334
PspPI GGNCC 2 cut(s) 146, 182
PsuI RGATCY 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 24, 270
SatI GCNGC 3 cut(s) 134, 137, 367
Sau3AI GATC 4 cut(s) 45, 61, 73, 456
Sau96I GGNCC 2 cut(s) 146, 182
SetI ASST 4 cut(s) 24, 324, 352, 445
SfaNI GCATC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SsiI CCGC 3 cut(s) 133, 136, 366
SspMI CTAG 2 cut(s) 326, 440
TaqI TCGA 1 cut(s) 85
TauI GCSGC 3 cut(s) 136, 139, 369
Tru1I TTAA 2 cut(s) 24, 270
Tru9I TTAA 2 cut(s) 24, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 2 cut(s) 326, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.