Rorug02G0319000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002834
Physical Location & Seq
Reverse (-)
38996271 .. 39004416
8146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0319000.1

Sequence Viewer

Length: 672 bp
ATGTATCGGAAGTGTGCAGAAGAGAAGAGCGGTCTTCTGCGACAGAGTGAGGCCGATCCGAGAGAGAGAGAGGAAGAGCAGGAGACGGGAAGAGTTGAATTGATTATGATGCAGCTCAATTCAAGTTTTTATGACAGTCATCAAATGTACTACCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGATTACAGGAGTCTGGGTTTTGGGTCTCTTGCCTTTGTTTTTGTTCTGATCGAGTTTCCAACCTTGGAATTGATTGTAGGCTATGTAGAAATCTGATGAGTAATCAGCAAAAGAAGAAACGGTTTCATTTTCAGAAAAGCAAAATAAGAAAAGCGACCACAATAAAGTTCCTTGGTTTGCTGAGTTCTCCTTTGAATTCATGGATATATGGGTTTTTTGGTTTAGGGGTTGTGATTGTGTTTCGGATTGGGATTTCGGAATTGATTGAAAAGGCTTTGTTTGTGCTACAGTTTCAACTCTGGGCAATTGATTGCAATACCTTCAAGGTTAGAGCTGCTGAGCTTCGACAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.8

Weight (kDa)

9.48

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 30
AccII CGCG 1 cut(s) 193
AciI CCGC 2 cut(s) 30, 193
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 177, 448
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 6 cut(s) 98, 123, 448, 521, 548, 577
AhlI ACTAGT 1 cut(s) 607
AluBI AGCT 4 cut(s) 115, 185, 587, 595
AluI AGCT 4 cut(s) 115, 185, 587, 595
Alw26I GTCTC 3 cut(s) 77, 283, 660
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 112, 587
ApoI RAATTY 2 cut(s) 177, 448
AspS9I GGNCC 1 cut(s) 620
AvaII GGWCC 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 124, 574
BccI CCATC 2 cut(s) 167, 220
BcoDI GTCTC 3 cut(s) 77, 283, 660
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 539
BisI GCNGC 2 cut(s) 113, 588
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 2 cut(s) 114, 589
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 316, 424
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 316, 424
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 207
BseMII CTCAG 4 cut(s) 183, 425, 582, 656
BseNI ACTGG 1 cut(s) 253
BseXI GCAGC 2 cut(s) 124, 574
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 623
BsmAI GTCTC 3 cut(s) 77, 283, 660
BsmBI CGTCTC 2 cut(s) 77, 660
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 55, 202, 301
Bsp1720I GCTNAGC 1 cut(s) 591
BspACI CCGC 2 cut(s) 30, 193
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 4 cut(s) 182, 426, 583, 655
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 2 cut(s) 20, 69
BspTNI GGTCTC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 622
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 316, 424
BssMI GATC 3 cut(s) 55, 202, 301
BssT1I CCWWGG 2 cut(s) 316, 424
Bst4CI ACNGT 3 cut(s) 137, 375, 543
Bst6I CTCTTC 4 cut(s) 15, 20, 69, 85
BstDEI CTNAG 4 cut(s) 169, 434, 591, 642
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 3 cut(s) 58, 205, 304
BstMAI GTCTC 3 cut(s) 77, 283, 660
BstMBI GATC 3 cut(s) 55, 202, 301
BstMCI CGRYCG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 124, 574
BstV2I GAAGAC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 169, 434, 591, 642
DpnI GATC 3 cut(s) 57, 204, 303
DpnII GATC 3 cut(s) 55, 202, 301
Eam1104I CTCTTC 4 cut(s) 15, 20, 69, 85
EarI CTCTTC 4 cut(s) 15, 20, 69, 85
Eco130I CCWWGG 2 cut(s) 316, 424
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 316, 424
ErhI CCWWGG 2 cut(s) 316, 424
Esp3I CGTCTC 2 cut(s) 77, 660
FaeI CATG 1 cut(s) 456
FaiI YATR 8 cut(s) 107, 132, 246, 337, 454, 460, 462, 630
FatI CATG 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 113, 588
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 113, 588
FspBI CTAG 1 cut(s) 608
GluI GCNGC 2 cut(s) 113, 588
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 623
Hin1II CATG 1 cut(s) 456
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 623
Hpy188I TCNGA 8 cut(s) 9, 60, 172, 301, 348, 387, 498, 511
Hpy188III TCNNGA 1 cut(s) 657
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 137, 375, 543
HpyCH4V TGCA 3 cut(s) 17, 112, 567
HpyF3I CTNAG 4 cut(s) 169, 434, 591, 642
Hsp92II CATG 1 cut(s) 456
Kzo9I GATC 3 cut(s) 55, 202, 301
LguI GCTCTTC 2 cut(s) 20, 69
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 8 cut(s) 65, 168, 234, 245, 252, 538, 629, 636
Lsp1109I GCAGC 2 cut(s) 124, 574
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 608
MalI GATC 3 cut(s) 57, 204, 303
MbiI CCGCTC 1 cut(s) 30
MboI GATC 3 cut(s) 55, 202, 301
MboII GAAGA 7 cut(s) 26, 32, 37, 86, 102, 207, 379
MfeI CAATTG 1 cut(s) 558
MluCI AATT 7 cut(s) 98, 118, 177, 321, 448, 512, 558
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 43, 64, 209
MspI CCGG 1 cut(s) 623
MunI CAATTG 1 cut(s) 558
MvnI CGCG 1 cut(s) 193
NdeII GATC 3 cut(s) 55, 202, 301
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 1 cut(s) 197
PciSI GCTCTTC 2 cut(s) 20, 69
PkrI GCNGC 2 cut(s) 114, 589
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 620
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SapI GCTCTTC 2 cut(s) 20, 69
SatI GCNGC 2 cut(s) 113, 588
Sau3AI GATC 3 cut(s) 55, 202, 301
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 1 cut(s) 272
SetI ASST 8 cut(s) 117, 187, 318, 575, 582, 589, 597, 664
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 620
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 7 cut(s) 98, 118, 177, 321, 448, 512, 558
SsiI CCGC 2 cut(s) 30, 193
SspMI CTAG 1 cut(s) 608
StyI CCWWGG 2 cut(s) 316, 424
TaaI ACNGT 3 cut(s) 137, 375, 543
TaqI TCGA 5 cut(s) 201, 205, 304, 598, 658
TasI AATT 7 cut(s) 98, 118, 177, 321, 448, 512, 558
TatI WGTACW 1 cut(s) 147
TseI GCWGC 2 cut(s) 112, 587
TspDTI ATGAA 2 cut(s) 368, 441
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 2 cut(s) 177, 448
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.