Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

53270810 .. 53272250

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGCGGCAACTGCAGCAGCAGCAGCAGCAGCTTCAGGAGCCCCCAAGCTCCTCCTCCGGTGCAGGCAGTCCTCCTCTTCCGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTGCCACAAGGACCAAAGTGTCTTCTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGAAGCAGAAGAGAATTCAAGCATCGTTAACAACGCCACCGGTTTCAACTCTCAGAAGGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTTGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.79

Weight (kDa)

9.75

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	114, 231, 259
AluBI	AGCT	7 cut(s)	35, 52, 119, 182, 299, 320, 413
AluI	AGCT	7 cut(s)	35, 52, 119, 182, 299, 320, 413
Alw21I	GWGCWC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	86, 105
ApeKI	GCWGC	8 cut(s)	17, 20, 23, 26, 29, 32, 119, 336
ApoI	RAATTY	1 cut(s)	226
AsiGI	ACCGGT	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	86, 156
AsuC2I	CCSGG	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	46, 184
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	8 cut(s)	29, 32, 35, 38, 41, 44, 106, 348
BccI	CCATC	2 cut(s)	131, 182
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	85
BfaI	CTAG	2 cut(s)	296, 410
BfmI	CTRYAG	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	86, 156
BmiI	GGNNCC	2 cut(s)	43, 304
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	243
BmtI	GCTAGC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	85
BsaWI	WCCGGW	2 cut(s)	60, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	123, 129, 174
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	278, 342
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	3 cut(s)	44, 47, 67
BseXI	GCAGC	8 cut(s)	29, 32, 35, 38, 41, 44, 106, 348
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	88, 107
BshTI	ACCGGT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	61, 84, 252
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	2 cut(s)	88, 107
Bsp1286I	GDGCHC	2 cut(s)	46, 184
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	2 cut(s)	88, 107
BspCNI	CTCAG	2 cut(s)	277, 343
BspLI	GGNNCC	2 cut(s)	43, 304
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	1 cut(s)	426
Bst6I	CTCTTC	3 cut(s)	85, 115, 216
BstC8I	GCNNGC	3 cut(s)	68, 90, 297
BstDEI	CTNAG	2 cut(s)	264, 351
BstF5I	GGATG	3 cut(s)	123, 129, 174
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 17, 23, 26, 29, 32, 41
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	8 cut(s)	29, 32, 35, 38, 41, 44, 106, 348
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	88, 107
BtsCI	GGATG	3 cut(s)	123, 129, 174
Cac8I	GCNNGC	3 cut(s)	68, 90, 297
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	86, 156
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	264, 351
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	85, 115, 216
EarI	CTCTTC	3 cut(s)	85, 115, 216
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	2 cut(s)	46, 184
Eco47I	GGWCC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	46, 184
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	104, 333, 341, 374, 389
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	426
FokI	GGATG	3 cut(s)	110, 116, 161
FriOI	GRGCYC	2 cut(s)	46, 184
FspBI	CTAG	2 cut(s)	296, 410
HaeIII	GGCC	2 cut(s)	88, 107
HapII	CCGG	3 cut(s)	61, 84, 252
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	61, 84, 252
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	179, 267, 426
Hpy188III	TCNNGA	3 cut(s)	39, 185, 350
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	262, 283
HpyCH4V	TGCA	4 cut(s)	17, 66, 92, 443
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 17, 23, 26, 29, 32, 41
HpyF3I	CTNAG	2 cut(s)	264, 351
Hsp92II	CATG	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	426
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	3 cut(s)	41, 57, 317
Lsp1109I	GCAGC	8 cut(s)	29, 32, 35, 38, 41, 44, 106, 348
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	296, 410
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	7 cut(s)	72, 102, 159, 218, 221, 224, 233
MhlI	GDGCHC	2 cut(s)	46, 184
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	6 cut(s)	65, 68, 85, 88, 118, 201
MseI	TTAA	1 cut(s)	240
MspI	CCGG	3 cut(s)	61, 84, 252
MspR9I	CCNGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	7 cut(s)	14, 17, 23, 26, 29, 32, 41
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	426
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	43, 304
PinAI	ACCGGT	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	43, 304
PspPI	GGNCC	2 cut(s)	86, 156
PstI	CTGCAG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	2 cut(s)	86, 156
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	46, 184
SetI	ASST	8 cut(s)	37, 54, 121, 184, 294, 301, 322, 415
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	296, 410
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	83
TasI	AATT	1 cut(s)	226
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	8 cut(s)	17, 20, 23, 26, 29, 32, 119, 336
TspDTI	ATGAA	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	2 cut(s)	296, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.